Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00359 ATGAATTGTTGCTCTACGCCAGGTAGAAAGGGAGTGCAAGGAGCACAGCCTGGTCCTGTTCTCGATTGGATGCAGAGAGTGAGAATTGCTGTTGATGCAGCTCGAGGATTGGAATACTTGCATGAGAAGGTTCAGCCTTCTATCATACATAGAGATGTTAGATCCAGCAATGTGCTTCTCTTCGAAGATTTCAAAGCAAAGATTGCAGACTTTAACCTTTCAAACCAGGCTCCTGACATGGCTGCTCGGCTTCACTCTACTCGTGTTTTAGGAACTTTTGGCTATCATGCTCCAGAGTATGCAATGACGGGACAATTGACACAGAAGAGTGATGTCTATAGCTTTGGAGTCGTTCTACTTGAACTTTTGACCGGGAGGAAGCCGGTTGATCATACCATGCCTCGCGGTCAGCAGAGTCTTGTTACTTGGGCTACCCCAAGACTAAGTGAAGACAAAGTCAAACAATGTGTTGATCCAAGGCTGAAGGGTGAATATCCCCCCAAAGGAGTTGCCAAGCTGGCCGCTGTGGCAGCTCTGTGTGTGCAGTACGAAGCCGAGTTCAGGCCAAACATGAGCATCGTTGTCAAGGCTCTCCAGCCACTTCTAAAGCCACCTGCCCCTGCTCCGGCCGTGGAACCTTGA 642 49.07 MNCCSTPGRKGVQGAQPGPVLDWMQRVRIAVDAARGLEYLHEKVQPSIIHRDVRSSNVLLFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPRLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKPPAPAPAVEP* 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2171275 2172286 + CsaV3_4G003590.1 Csa04g00359 525969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00359 213 Pfam Protein tyrosine and serine/threonine kinase 21 198 IPR001245 GO:0004672|GO:0006468
Csa04g00359 213 SMART tyrkin_6 1 198 IPR020635 GO:0004713|GO:0006468
Csa04g00359 213 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 8 205 - -
Csa04g00359 213 SUPERFAMILY Protein kinase-like (PK-like) 16 205 IPR011009 -
Csa04g00359 213 ProSiteProfiles Protein kinase domain profile. 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00359 213 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 8 205 - -
Csa04g00359 213 ProSitePatterns Tyrosine protein kinases specific active-site signature. 48 60 IPR008266 GO:0004672|GO:0006468
Csa04g00359 213 Gene3D Transferase(Phosphotransferase) domain 1 12 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00359 Csa-Chr4:2171275 Csa06g00373 Csa-Chr6:3096514 5.35E-143 dispersed
Csa04g00359 Csa-Chr4:2171275 Csa07g01962 Csa-Chr7:19297443 4.70E-123 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78113 PF07714 PK_Tyr_Ser-Thr 6.70E-29 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00359 K13436 - csv:101215403 360.918