Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00359 ATGAATTGTTGCTCTACGCCAGGTAGAAAGGGAGTGCAAGGAGCACAGCCTGGTCCTGTTCTCGATTGGATGCAGAGAGTGAGAATTGCTGTTGATGCAGCTCGAGGATTGGAATACTTGCATGAGAAGGTTCAGCCTTCTATCATACATAGAGATGTTAGATCCAGCAATGTGCTTCTCTTCGAAGATTTCAAAGCAAAGATTGCAGACTTTAACCTTTCAAACCAGGCTCCTGACATGGCTGCTCGGCTTCACTCTACTCGTGTTTTAGGAACTTTTGGCTATCATGCTCCAGAGTATGCAATGACGGGACAATTGACACAGAAGAGTGATGTCTATAGCTTTGGAGTCGTTCTACTTGAACTTTTGACCGGGAGGAAGCCGGTTGATCATACCATGCCTCGCGGTCAGCAGAGTCTTGTTACTTGGGCTACCCCAAGACTAAGTGAAGACAAAGTCAAACAATGTGTTGATCCAAGGCTGAAGGGTGAATATCCCCCCAAAGGAGTTGCCAAGCTGGCCGCTGTGGCAGCTCTGTGTGTGCAGTACGAAGCCGAGTTCAGGCCAAACATGAGCATCGTTGTCAAGGCTCTCCAGCCACTTCTAAAGCCACCTGCCCCTGCTCCGGCCGTGGAACCTTGA 642 49.07 MNCCSTPGRKGVQGAQPGPVLDWMQRVRIAVDAARGLEYLHEKVQPSIIHRDVRSSNVLLFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPRLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKPPAPAPAVEP* 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2171275 2172286 + CsaV3_4G003590.1 Csa04g00359 525969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00359 213 Pfam Protein tyrosine and serine/threonine kinase 21 198 IPR001245 GO:0004672|GO:0006468
Csa04g00359 213 SMART tyrkin_6 1 198 IPR020635 GO:0004713|GO:0006468
Csa04g00359 213 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 8 205 - -
Csa04g00359 213 SUPERFAMILY Protein kinase-like (PK-like) 16 205 IPR011009 -
Csa04g00359 213 ProSiteProfiles Protein kinase domain profile. 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00359 213 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 8 205 - -
Csa04g00359 213 ProSitePatterns Tyrosine protein kinases specific active-site signature. 48 60 IPR008266 GO:0004672|GO:0006468
Csa04g00359 213 Gene3D Transferase(Phosphotransferase) domain 1 12 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00359 K13436 PTI1; pto-interacting protein 1 [EC:2.7.11.1] - csv:101215403 360.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00359 Csa-Chr4:2171275 Csa06g00373 Csa-Chr6:3096514 5.35E-143 dispersed
Csa04g00359 Csa-Chr4:2171275 Csa07g01962 Csa-Chr7:19297443 4.70E-123 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g00420 . 31 790 Strubbelig Receptor Gene Family AT4G03390 62.3 4.6e-208 721.5
Csa06g03601 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.4 1.0e-159 560.8
Csa07g02300 CCT 382 689 Strubbelig Receptor Gene Family AT4G03390 56.2 1.1e-89 328.2
Csa03g03592 . 17 736 Strubbelig Receptor Gene Family AT5G06820 53.3 7.0e-182 634.4
Csa03g03593 . 18 704 Strubbelig Receptor Gene Family AT5G06820 50.7 8.6e-164 574.3
Csa06g00324 . 22 697 Strubbelig Receptor Gene Family AT1G78980 60.6 1.7e-193 672.9
Csa03g02807 CCT 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Csa07g02300 CCT 24 692 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-125 446.4
Csa06g00324 . 20 674 Strubbelig Receptor Gene Family AT3G13065 51.2 5.1e-142 501.9
Csa01g03495 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.3e-84 311.2
Csa03g03592 . 17 736 Strubbelig Receptor Gene Family AT5G06820 53.3 7.0e-182 634.4
Csa03g03593 . 18 704 Strubbelig Receptor Gene Family AT5G06820 50.7 8.6e-164 574.3
Csa07g00420 . 31 790 Strubbelig Receptor Gene Family AT4G03390 62.3 4.6e-208 721.5
Csa06g03601 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.4 1.0e-159 560.8
Csa07g02300 CCT 382 689 Strubbelig Receptor Gene Family AT4G03390 56.2 1.1e-89 328.2
Csa06g00324 . 20 674 Strubbelig Receptor Gene Family AT3G13065 51.2 5.1e-142 501.9
Csa06g00324 . 22 697 Strubbelig Receptor Gene Family AT1G78980 60.6 1.7e-193 672.9
Csa03g02807 CCT 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Csa07g02300 CCT 24 692 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-125 446.4
Csa03g02807 CCT 1 719 Strubbelig Receptor Gene Family AT1G53730 59.7 1.0e-214 743.4
Csa07g02300 CCT 1 714 Strubbelig Receptor Gene Family AT1G53730 59.7 1.1e-184 643.7
Csa06g00324 . 15 682 Strubbelig Receptor Gene Family AT1G53730 52.0 4.0e-158 555.4
Csa03g02807 CCT 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 1.2e-188 656.8
Csa07g02300 CCT 6 704 Strubbelig Receptor Gene Family AT3G14350 56.0 5.7e-170 594.7
Csa04g00359 . 21 203 Strubbelig Receptor Gene Family AT3G14350 51.1 2.0e-42 171.0
Csa01g03495 . 138 712 Strubbelig Receptor Gene Family AT4G22130 61.3 1.5e-184 642.9
Csa03g02807 CCT 398 726 Strubbelig Receptor Gene Family AT4G22130 63.1 1.2e-120 430.6
Csa07g02300 CCT 391 706 Strubbelig Receptor Gene Family AT4G22130 64.2 5.1e-116 415.2
Csa07g00420 . 458 782 Strubbelig Receptor Gene Family AT4G22130 58.0 3.3e-107 386.0
Csa06g03601 . 464 752 Strubbelig Receptor Gene Family AT4G22130 60.8 5.1e-100 362.1
Csa06g00324 . 386 696 Strubbelig Receptor Gene Family AT4G22130 55.9 2.8e-98 356.3
Csa03g03592 . 387 702 Strubbelig Receptor Gene Family AT4G22130 50.6 9.4e-86 314.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000194 4 9 5 8 6 5 8 4 4 5 5 3 9 5 3 9 4 2 6 5 5 6 4 3 4 5 4 0 1 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78113 PF07714 PK_Tyr_Ser-Thr 6.70E-29 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00359 Csa_Chr04 FPKM 17.408157 15.479617 18.370897 19.822622 15.980929 8.648719 14.529163 11.830764 10.244047 8.268692