Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa04g00386 | ATGTCCTCCGCCCATGGTGGCGCCCCCGCCTCTGCTGGTGGTCTCACTCGCTACGGTTCCGCCCCTGGATCTTTCCTGACAACAGCAGTCGATTCTGTGATTGGAACTCGTCAACCGGACTCCGCCGCCACGCTCCGTGCCCCGCCCTCCTTTGGCGCCCACTACTTCTCCTCCGCCGATTCCTCCGTCGTCGAATCCTCAAGGAAAGTTGTTCAGTCCTCCTCTACTTCCAACGATCTAAAATCGTCTTCTGCCACCGCCGCCGCCTTGAATAGGTCGTACGGATTCAATGATTTGGCGTTAGGGGATTTCTCGACGGGTAGAAACTTCAATAGTAATGGTGGTCAATCCTCTTCCTCTTCACCGTTGGTTCGCCAGAGAAGCTCTCCAGCTGGATTTCTCGGCCATCTCTCCGTCGCCGAACCAAACGGTGGGTTTTCATTGACAATGGGGGGAGGTGGAGGTGGAAATGGAGGGGGAAGATTAAAGAGTCAAATGAGTTTCAATGGGCAAGATAACTCACTTTCTCAAATCTCAGAAATTAGTGAAAGTTTTGTAGAGGCAGCCAATTCTTGTAGCAATGGCCTTCAAAGCAACACCAATTCAACGCATTCCTTTGCTCCTTCTTCTGCCTTTGCTATGGATTCTTCTTGGGACACTTCTAGTAACTCCATTGTCTTTGCTGCTCCTCATGCTAAAAGATCCAAGCACCATTCCGATGCTGACTTCTTCACCGGCCTCGAATCTCAATTTAGCTTGCCACAAACAACTCTAGAAATGGCAGCTGTGGAGAGGCTGCTACAAATTCCTGAAGACTCCGTTCCTTGTAAGATTCGAGCCAAGCGTGGTTGTGCTACTCATCCTCGGAGTATCGCCGAACGGGAGAGGAGAACTAGAATCAGTGGAAAATTGAAAAAGCTTCAAGAGCTTGTTCCCAACATGGATAAGCAAACAAGTTATTCAGACATGTTGGACTTAGCAGTGCAGCATATCAAAGGTCTTCAAAATCAAATTCAGAAGCTTAACAAAGAGGTTGAGAATTGCACCTGTGGAAGCAAAGAATGCTTATAA | 1071 | 48.74 | MSSAHGGAPASAGGLTRYGSAPGSFLTTAVDSVIGTRQPDSAATLRAPPSFGAHYFSSADSSVVESSRKVVQSSSTSNDLKSSSATAAALNRSYGFNDLALGDFSTGRNFNSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEPNGGFSLTMGGGGGGNGGGRLKSQMSFNGQDNSLSQISEISESFVEAANSCSNGLQSNTNSTHSFAPSSAFAMDSSWDTSSNSIVFAAPHAKRSKHHSDADFFTGLESQFSLPQTTLEMAAVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVENCTCGSKECL* | 357 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2368080 | 2373266 | - | CsaV3_4G003860.1 | Csa04g00386 | 525996 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa04g00386 | 356 | MobiDBLite | consensus disorder prediction | 145 | 165 | - | - | |
| Csa04g00386 | 356 | Coils | Coil | 324 | 351 | - | - | |
| Csa04g00386 | 356 | CDD | bHLH_AtbHLH_like | 289 | 341 | IPR045239 | - | |
| Csa04g00386 | 356 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Csa04g00386 | 356 | Pfam | Helix-loop-helix DNA-binding domain | 289 | 335 | IPR011598 | GO:0046983 | |
| Csa04g00386 | 356 | Gene3D | - | 285 | 353 | IPR036638 | GO:0046983 | |
| Csa04g00386 | 356 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 284 | 334 | IPR011598 | GO:0046983 | |
| Csa04g00386 | 356 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 287 | 348 | IPR036638 | GO:0046983 | |
| Csa04g00386 | 356 | SMART | finulus | 290 | 340 | IPR011598 | GO:0046983 | |
| Csa04g00386 | 356 | PANTHER | TRANSCRIPTION FACTOR BHLH129 | 14 | 349 | - | - | |
| Csa04g00386 | 356 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 14 | 349 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa04g00386 | Csa-Chr4:2368080 | Csa07g02038 | Csa-Chr7:19779388 | 1.64E-41 | dispersed | |
| Csa04g00386 | Csa-Chr4:2368080 | Csa03g03602 | Csa-Chr3:32107556 | 2.74E-47 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 31481 | PF00010 | HLH | 9.50E-09 | No_clan | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa04g00386 | - | - | csv:101205392 | 622.854 |