Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00402 ATGGCTGATTCCCGAGCTCTTCCTCATCGCAGTGGAGCAGGTATAGTCAAAAGTATCCGTTTAGAGAATTTCATGTGTCACAGCAACTTGTATATTCAATTTGGCGAGTGGCTCAATTTCATTACTGGGCAGAATGGAAGTGGTAAGAGTGCTATTTTGACTGCTTTGTGTGTTGCATTTGGCTGTCGAGCTAAAGGGACCCAAAGGGCAGCTACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCATGTTGTATTGCAAAATAATGGGGAGGATGCTTTCAAGCATGGAATATATGGAGACGTAATAATCATCGAAAGAAGGATTTCTGAATCCACTAGTGCCATTGTTTTAAAGGATTGTCAAGGAAAAAAGGTTGCCAGCCGAAGGGATGAACTACGAGAGCTAGTAGAACATTTTAACATAGATGTTGAGAATCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGAAACGACAAAGACAAATTTAAGTTCTTTTTCAAGGCAACTCTTCTTCAGCAAGTGGACGATCTGCTGAAAAATATTTTCGATAATTTGAGATCTGCTAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGGAACTGAATGAACTGCGAGGAAAAATAAAAAACATGGAGCAAGTAGAAGAAATCTCTCAACAAGTTCAACAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATACGATGTAGACAAGCAGCTTCAGGAGCAAAGTGCAAAAATAGGAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATTGATCATCAGCTGGGTCTGGTGGAAAAATTAAGAGATCGCTATATCGAGAAAAAAACTCAAATTGCAAGCATGATGGAGAGAACTTCAGAAGTGAGAAGAATGAAGGATGAACTGCAGGAAACTCTTACCTCGGCAACAAGAGAAAAGCTCGGACTTGAAGAGGAGCATGGTCGTAAAATAAACTACATTCAAAAGCTGGCAAAGCGTGTTAGGCTGCTTGAGCAACAAGTTCAAGATATTCATGAGCAGCACATAAAAAATACCCAGGCTGAAGAATCTGAAATTGAAGAAAAGTTGAAGGAACTCGAATCCGAGACTGAAGCTGCTAAGTCAACAGTAATGAGGTTGAAAGAGGAGGAGAATGCCTTGATGGAAAGTCTGTACAGTGGGAGAAATGAAATAAAAAAGATTGCCGAAGAGATTGCAAGTTACGAGAAAAAAGGCTATGAATTTTCTCACTCAATTCAAGAGCTCAAGCAGCATCAAACCAACAAGGTCACAGCTTTTGGAGGTGACAAAGTCATTCAATTATTACGTGCGATTGAGAGACACCATCAAAGGTTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAATTGCCATTGGGAGGTTGCTCAATGCTTTCATCGTGACTGATCACCAAGATTCTCTTCTTTTGAGAAGATGTGCAAATGAAGCTAATTATAGGCAACTCCCAATTGTCATCTATGACTTTTCAAGACCAGTGTTAAATATTCCAGCTCACATGCTTCCTCAAACAAAGCATCCTACGACCCTTTCTGTCATTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATAATGTGGGTAAATCAGTTGCATTTGACCAACGGATCTCAAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATGTTTTCACGTGGTTCTGTTCAGACAATTCTTCCCCCAGTTAGAAAGCCCAGAAGTGGCAGACTTTGTAGCTCCTTTGACGACCAAATTAAAAGTCTTGAAAAAGATGCATTGAATGTAAAACAAGAAGCTGAACAATGTAGGAAGAGGAAGAGAGTTTCAGAAGAACAACTCCGGGATCTTGAAGACAACCTAAACAATGCGAAGAGGAGGTGTCGGAGTGCAGAACGGTTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGAAAGTCACAAGTTGCTGAAACTAGTTCAGTACCTTCATCAAATGTGGATGAGCTACACCAAGAAATTTCTAAAATTGAAGAGGAGATACAAGAGAATAAGATGCTTCTTGAAAAGTTTAGAGTTAGGATGAAAGAAGCGGAAGCAAAGGCAAAAGATCTTAAAGTATCATTTGAAAATCTGTGTGAGTCGGCAAAAGGAGAAATTGATGCATTTGAAGAAGTTGAGAGAGATATGTTGCAGCTTGAAAGAAAATTGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGTATTATGACTAATAAGGTCCTTTTTGATATTAAAGAGGCAGAGAGACAACATCAGGAGCTTGAGCGTCATCGTAAGGAGAGTTACAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACGCCTGAACAACTCAGTGCACAATTAACGAGGCTAAATCAGAGACTTAATAACGAGACCAGAAGATGTTCTGAATCTTTGGAAGACCTGAGGATGATGTATGAGAAAAAGGAGCGCACAATTATAAGAAAACGACAGACTTACAAAAGTTTTAGAGAGAAGTTGGATGCTTGCCAGAAAGCTCTTCAGCTACGGTGGAACAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGCGGAAATATAAAAGTTAATTATGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAGGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGCGGAGAACGATCATTTTCAACTCTATGCTTTGCTTTGGCATTACACGAGATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATCACGCCTCATGACATCGGGGTGGTAAAACAAGGAGAAAGAATCAAGAAGCAACAAATGGCAGCTCCTCGATCGTGA 3159 40.23 MADSRALPHRSGAGIVKSIRLENFMCHSNLYIQFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRAATLKDFIKTGCSHAVIHVVLQNNGEDAFKHGIYGDVIIIERRISESTSAIVLKDCQGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDNLRSANALVDDLESTIRPVEKELNELRGKIKNMEQVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIGKLQDRIPICRAKIDHQLGLVEKLRDRYIEKKTQIASMMERTSEVRRMKDELQETLTSATREKLGLEEEHGRKINYIQKLAKRVRLLEQQVQDIHEQHIKNTQAEESEIEEKLKELESETEAAKSTVMRLKEEENALMESLYSGRNEIKKIAEEIASYEKKGYEFSHSIQELKQHQTNKVTAFGGDKVIQLLRAIERHHQRFKKPPIGPIGSHLNLVNGDMWAPAVEIAIGRLLNAFIVTDHQDSLLLRRCANEANYRQLPIVIYDFSRPVLNIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYNVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRKPRSGRLCSSFDDQIKSLEKDALNVKQEAEQCRKRKRVSEEQLRDLEDNLNNAKRRCRSAERFLMSKNLELQDLRKSQVAETSSVPSSNVDELHQEISKIEEEIQENKMLLEKFRVRMKEAEAKAKDLKVSFENLCESAKGEIDAFEEVERDMLQLERKLHSAEKEKDHYEGIMTNKVLFDIKEAERQHQELERHRKESYSKASIICPESEIEALGDWDGSTPEQLSAQLTRLNQRLNNETRRCSESLEDLRMMYEKKERTIIRKRQTYKSFREKLDACQKALQLRWNKFERNASLLKRQLTWQFNGHLRKKGISGNIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGVVKQGERIKKQQMAAPRS* 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2449183 2465205 - CsaV3_4G004020.1 Csa04g00402 526012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00402 1052 Coils Coil 189 243 - -
Csa04g00402 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 1037 IPR027417 -
Csa04g00402 1052 Coils Coil 284 332 - -
Csa04g00402 1052 Coils Coil 850 870 - -
Csa04g00402 1052 Coils Coil 710 793 - -
Csa04g00402 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 8 1052 - -
Csa04g00402 1052 Coils Coil 635 683 - -
Csa04g00402 1052 Pfam RecF/RecN/SMC N terminal domain 16 1042 IPR003395 -
Csa04g00402 1052 Coils Coil 802 822 - -
Csa04g00402 1052 CDD ABC_SMC6_euk 930 1052 - -
Csa04g00402 1052 Gene3D - 794 1048 IPR027417 -
Csa04g00402 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 8 1052 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Csa04g00402 1052 Coils Coil 362 396 - -
Csa04g00402 1052 Coils Coil 340 360 - -
Csa04g00402 1052 CDD ABC_SMC6_euk 16 168 - -
Csa04g00402 1052 Gene3D - 15 281 IPR027417 -
Csa04g00402 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 297 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00402 Csa-Chr4:2449183 Csa07g01986 Csa-Chr7:19450572 1.51E-23 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00402 K22804 - csv:101208493 2009.19