Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00402 ATGGCTGATTCCCGAGCTCTTCCTCATCGCAGTGGAGCAGGTATAGTCAAAAGTATCCGTTTAGAGAATTTCATGTGTCACAGCAACTTGTATATTCAATTTGGCGAGTGGCTCAATTTCATTACTGGGCAGAATGGAAGTGGTAAGAGTGCTATTTTGACTGCTTTGTGTGTTGCATTTGGCTGTCGAGCTAAAGGGACCCAAAGGGCAGCTACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCATGTTGTATTGCAAAATAATGGGGAGGATGCTTTCAAGCATGGAATATATGGAGACGTAATAATCATCGAAAGAAGGATTTCTGAATCCACTAGTGCCATTGTTTTAAAGGATTGTCAAGGAAAAAAGGTTGCCAGCCGAAGGGATGAACTACGAGAGCTAGTAGAACATTTTAACATAGATGTTGAGAATCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGAAACGACAAAGACAAATTTAAGTTCTTTTTCAAGGCAACTCTTCTTCAGCAAGTGGACGATCTGCTGAAAAATATTTTCGATAATTTGAGATCTGCTAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGGAACTGAATGAACTGCGAGGAAAAATAAAAAACATGGAGCAAGTAGAAGAAATCTCTCAACAAGTTCAACAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATACGATGTAGACAAGCAGCTTCAGGAGCAAAGTGCAAAAATAGGAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATTGATCATCAGCTGGGTCTGGTGGAAAAATTAAGAGATCGCTATATCGAGAAAAAAACTCAAATTGCAAGCATGATGGAGAGAACTTCAGAAGTGAGAAGAATGAAGGATGAACTGCAGGAAACTCTTACCTCGGCAACAAGAGAAAAGCTCGGACTTGAAGAGGAGCATGGTCGTAAAATAAACTACATTCAAAAGCTGGCAAAGCGTGTTAGGCTGCTTGAGCAACAAGTTCAAGATATTCATGAGCAGCACATAAAAAATACCCAGGCTGAAGAATCTGAAATTGAAGAAAAGTTGAAGGAACTCGAATCCGAGACTGAAGCTGCTAAGTCAACAGTAATGAGGTTGAAAGAGGAGGAGAATGCCTTGATGGAAAGTCTGTACAGTGGGAGAAATGAAATAAAAAAGATTGCCGAAGAGATTGCAAGTTACGAGAAAAAAGGCTATGAATTTTCTCACTCAATTCAAGAGCTCAAGCAGCATCAAACCAACAAGGTCACAGCTTTTGGAGGTGACAAAGTCATTCAATTATTACGTGCGATTGAGAGACACCATCAAAGGTTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAATTGCCATTGGGAGGTTGCTCAATGCTTTCATCGTGACTGATCACCAAGATTCTCTTCTTTTGAGAAGATGTGCAAATGAAGCTAATTATAGGCAACTCCCAATTGTCATCTATGACTTTTCAAGACCAGTGTTAAATATTCCAGCTCACATGCTTCCTCAAACAAAGCATCCTACGACCCTTTCTGTCATTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATAATGTGGGTAAATCAGTTGCATTTGACCAACGGATCTCAAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATGTTTTCACGTGGTTCTGTTCAGACAATTCTTCCCCCAGTTAGAAAGCCCAGAAGTGGCAGACTTTGTAGCTCCTTTGACGACCAAATTAAAAGTCTTGAAAAAGATGCATTGAATGTAAAACAAGAAGCTGAACAATGTAGGAAGAGGAAGAGAGTTTCAGAAGAACAACTCCGGGATCTTGAAGACAACCTAAACAATGCGAAGAGGAGGTGTCGGAGTGCAGAACGGTTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGAAAGTCACAAGTTGCTGAAACTAGTTCAGTACCTTCATCAAATGTGGATGAGCTACACCAAGAAATTTCTAAAATTGAAGAGGAGATACAAGAGAATAAGATGCTTCTTGAAAAGTTTAGAGTTAGGATGAAAGAAGCGGAAGCAAAGGCAAAAGATCTTAAAGTATCATTTGAAAATCTGTGTGAGTCGGCAAAAGGAGAAATTGATGCATTTGAAGAAGTTGAGAGAGATATGTTGCAGCTTGAAAGAAAATTGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGTATTATGACTAATAAGGTCCTTTTTGATATTAAAGAGGCAGAGAGACAACATCAGGAGCTTGAGCGTCATCGTAAGGAGAGTTACAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACGCCTGAACAACTCAGTGCACAATTAACGAGGCTAAATCAGAGACTTAATAACGAGACCAGAAGATGTTCTGAATCTTTGGAAGACCTGAGGATGATGTATGAGAAAAAGGAGCGCACAATTATAAGAAAACGACAGACTTACAAAAGTTTTAGAGAGAAGTTGGATGCTTGCCAGAAAGCTCTTCAGCTACGGTGGAACAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGCGGAAATATAAAAGTTAATTATGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAGGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGCGGAGAACGATCATTTTCAACTCTATGCTTTGCTTTGGCATTACACGAGATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATCACGCCTCATGACATCGGGGTGGTAAAACAAGGAGAAAGAATCAAGAAGCAACAAATGGCAGCTCCTCGATCGTGA 3159 40.23 MADSRALPHRSGAGIVKSIRLENFMCHSNLYIQFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRAATLKDFIKTGCSHAVIHVVLQNNGEDAFKHGIYGDVIIIERRISESTSAIVLKDCQGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDNLRSANALVDDLESTIRPVEKELNELRGKIKNMEQVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIGKLQDRIPICRAKIDHQLGLVEKLRDRYIEKKTQIASMMERTSEVRRMKDELQETLTSATREKLGLEEEHGRKINYIQKLAKRVRLLEQQVQDIHEQHIKNTQAEESEIEEKLKELESETEAAKSTVMRLKEEENALMESLYSGRNEIKKIAEEIASYEKKGYEFSHSIQELKQHQTNKVTAFGGDKVIQLLRAIERHHQRFKKPPIGPIGSHLNLVNGDMWAPAVEIAIGRLLNAFIVTDHQDSLLLRRCANEANYRQLPIVIYDFSRPVLNIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYNVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRKPRSGRLCSSFDDQIKSLEKDALNVKQEAEQCRKRKRVSEEQLRDLEDNLNNAKRRCRSAERFLMSKNLELQDLRKSQVAETSSVPSSNVDELHQEISKIEEEIQENKMLLEKFRVRMKEAEAKAKDLKVSFENLCESAKGEIDAFEEVERDMLQLERKLHSAEKEKDHYEGIMTNKVLFDIKEAERQHQELERHRKESYSKASIICPESEIEALGDWDGSTPEQLSAQLTRLNQRLNNETRRCSESLEDLRMMYEKKERTIIRKRQTYKSFREKLDACQKALQLRWNKFERNASLLKRQLTWQFNGHLRKKGISGNIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGVVKQGERIKKQQMAAPRS* 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2449183 2465205 - CsaV3_4G004020.1 Csa04g00402 526012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00402 1052 Coils Coil 189 243 - -
Csa04g00402 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 1037 IPR027417 -
Csa04g00402 1052 Coils Coil 284 332 - -
Csa04g00402 1052 Coils Coil 850 870 - -
Csa04g00402 1052 Coils Coil 710 793 - -
Csa04g00402 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 8 1052 - -
Csa04g00402 1052 Coils Coil 635 683 - -
Csa04g00402 1052 Pfam RecF/RecN/SMC N terminal domain 16 1042 IPR003395 -
Csa04g00402 1052 Coils Coil 802 822 - -
Csa04g00402 1052 CDD ABC_SMC6_euk 930 1052 - -
Csa04g00402 1052 Gene3D - 794 1048 IPR027417 -
Csa04g00402 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 8 1052 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Csa04g00402 1052 Coils Coil 362 396 - -
Csa04g00402 1052 Coils Coil 340 360 - -
Csa04g00402 1052 CDD ABC_SMC6_euk 16 168 - -
Csa04g00402 1052 Gene3D - 15 281 IPR027417 -
Csa04g00402 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 297 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00402 K22804 SMC6; structural maintenance of chromosomes protein 6 - csv:101208493 2009.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00402 Csa-Chr4:2449183 Csa07g01986 Csa-Chr7:19450572 1.51E-23 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g01986 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 69.4 0.0e+00 1385.5
Csa04g00402 . 10 1053 Structural Maintenance of Chromosomes family AT5G07660 63.7 0.0e+00 1258.4
Csa04g00402 . 2 1053 Structural Maintenance of Chromosomes family AT5G61460 66.3 0.0e+00 1329.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00402 Csa_Chr04 FPKM 14.332767 17.950872 0.0 0.114244 0.0 0.0 0.0 0.0 0.0 0.0