Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00403 ATGAAAGTCATGAACCCAGATTATTCTAGTTTCCTCTTGTTTGTTGTTGTAGTTCTTTTGATTATCAACACTTTTCTTCTTGAGGTTGTTGTTTCTGTAAGTACTCCAACAGCTTTACCACTTCAACTTCTGTCTCTGCTTTCCTTAAAATCCACCATTAAGGACCCATCTTCAACCTTCCATGACTGGGATTATCCTACACCCACTTTCACTAGAGCTGATTCTCAAGACCCAATTTGGTGTTCGTGGTCTGGAATTGAATGTCATCGAAACTCAGCTGAAATCAGTTCCTTGGATTTGTCTCAACGTAATCTCTCTGGCTATATTCCCTCTGAAATCAAGTACTTGACCAGCTTGATCCATTTGAATTTGAGTGGCAACAGCTTTGTTGGGGCTTTCCCCACCGCCATTTTTGAGCTTCCTCACCTTAGAACTTTGGATATCAGTCACAATAATTTCAGCTCCATTTTCCCACCTGGGATTTCCAAGCTCAAGTTCTTGAACGTTTTCAATGCCTACAGTAATAACTTCACCGGTCCGTTACCTCAAGACCTTCCCCATCTCCACTTTCTAGAATGGCTTAGCCTCGGAGGAAGCTACTTCAGTGGAAATATTCCGGCGAGCTATGGCGGTTTATCACGGTTGAAATATTTGCATTTGGGTGGAAATGTTCTTGAGGGGGAAATTCCGGGACAGCTTGCGTATTTAAACAAATTAGAGAGAATGGAGATCGGTTACAATACCCTTTCCGGTGGGATTCCGTCGAAATTTCCTTTGCTGTTGAATCTGAAATACTTGGATATTGCCGAAGCGAATCTCTCTGGGACTCTGCCACAAGACATTGGGAACATGACGAACCTTCAGAATCTGCTTCTATTCAAGAATCGAATCAGTGGGGAAATTCCTAGAAGTTTGGGGAAATTAGAAGCGTTGGAAGAGCTTGATTTGTCTGAGAATGAACTTACCGGAACGATTCCGTCGGATTTGTATAATCTGAAGGAATTGACGGACTTGAGTTTGATGGAGAACGATTTGAGTGGGGAAATTCCACAAGCACTTGGCGATCTTCCTAATCTCGTGTCCTTGCGATTATGGAACAATTCGTTCACAGGTCCACTCCCTCAAAAACTCGGCTCCAACGGTAAGTTGCTTCAAGTTGATGTATCGTCAAATATGTTCACCGGTTCGATACCTCCGGATCTCTGCCATGGAAATAAGCTCTTCAAGCTCATTCTTTTTTCCAATAAATTAGAGCATGAACTTCCCGCGTCTTTAGCCAACTGCAAATCTCTCATTCGCTTTCGAATCCAAAATAACCGCCTCAACGGCTCGATTCCTTACGGTTTCGGCTTGCTAGAGAATCTCACATTCGCCGATTTCAGCAACAATAACTTCTCCGGCGAGATTCCGGCGGATATTGGTAATGCGGTTAGGTTACAGTACTTAAACATTTCACAGAACGCCTTCGGAACTTCCTTACCGGAGAATATCTGGAATTCGACGAGGTTAGAGATTTTCTCAGCAAGTTCTTCAAAAATCATCGGTAAAATCCCGGATTTCATCAGCTGTAGGTCCATCTACAAGATCGAACTCCAGGACAATAACTTAAACAGCAGTATCCCATGGACAATCGGCCACTGCGAGAAATTAATCACTCTGAATTTAGGCCGGAATTCCTTAACCGGCATTATTCCATGGGAGATATCAACGCTACCAGGGATCACCGCCATTGATCTATCTCATAACTCCCTCACAGGCACAATTCCTTCAAATTTCCAAAACTGTAGCACAATCGAAAGCTTCAACGTATCATACAACATGCTCACCGGCCCTATTCCATCAACCGGAACGATCTTCCCTGCATTACACCCATCGTCATTCATCGGCAACGATGGACTCTGCGGAGAGATTGTTTCAAAACCATGCGACACCGACACATTAACCGCCGGCGCAATAGAGGTCCGGCCGCAACAACCACGTAGGACGGCAGGAGCAATAGTTTGGATAATGGCGGGAGCATTCGGAATCGGACTGTTCATATTAGTAGCAGGAACGCGGTGTTTTCAGGCGAATTACAACCGTAGGTTCGGCGGTGGGGAAGAGGAAATCGGACCGTGGAAGTTAACCGCCTTTCAACGGTTGAACTTCACGGCGGAGGAAGTATTGGAATGTTTGACAATGACGGATAAAATACTGGGAATGGGGTCCACAGGGACCGTATATAAGGCGGAGATGCCAGGTGGCGAGATCATAGCGGTGAAGAAATTATGGGGGAAGTACAAAGAGAATATCCGACGGCGGAGAGGGGTTTTGGCTGAAGTGGATGTACTTGGGAACGTGCGGCACAGGAACATAGTGAGATTGTTAGGGTGCTGCAGTAACAGGGAGTGTACTATGTTACTCTACGAGTATATGCCTAATGGTAATTTGGATGATTTACTGCACGGTAAAAACAAGGGTGAAAATTTAGGGGCTGATTGGATGACTCGGTATAAGATTGCTTTGGGTGTTGCACAAGGAATTTGTTATCTTCACCATGACTGTGATCCCGTCATCGTTCACCGCGATTTGAAGCCCAGTAACATTTTATTGGACGGTGAGATGGAAGCCAGAGTCGCGGATTTTGGTGTCGCTAAATTGATCCAGACCGATGAATCTATGTCTGTCATCGCCGGATCCTACGGTTACATTGCACCAGAGTATGCATATACACTTCAAGTGGATGAAAAGAGTGATATTTATAGTTACGGAGTTGTGTTGATGGAAATTTTGAGTGGCAAGAAATCGGTGGACTCAGAATTTGGCGATGGAAATAGTATTGTGGACTGGGTGAGATCCAAGATTAAAATTAAGGATGGAGTCAGTCAAATATTAGATAAGAATGCGGGCGCGTCTTGTGTGTCTGTTAGAGAGGAAATGATACAAATGCTTCGTATTTCATTGCTTTGTACCAGTCGTAACCCTGCTGACCGACCGTCAATGCGCGACGTTGTTTTGATGTTACAAGAGGCTAAACCAAAGAGAAAATTATTCGGGAACATCATCCATGAAAGAAATGGTAACTGTGATAGTAGTGATAATATAATTTGCAACCGTCGTCATGGCGATGGTGACGTCCTTTTAGGTCATAAGACGGTAGATGAATGTTAA 3150 44.22 MKVMNPDYSSFLLFVVVVLLIINTFLLEVVVSVSTPTALPLQLLSLLSLKSTIKDPSSTFHDWDYPTPTFTRADSQDPIWCSWSGIECHRNSAEISSLDLSQRNLSGYIPSEIKYLTSLIHLNLSGNSFVGAFPTAIFELPHLRTLDISHNNFSSIFPPGISKLKFLNVFNAYSNNFTGPLPQDLPHLHFLEWLSLGGSYFSGNIPASYGGLSRLKYLHLGGNVLEGEIPGQLAYLNKLERMEIGYNTLSGGIPSKFPLLLNLKYLDIAEANLSGTLPQDIGNMTNLQNLLLFKNRISGEIPRSLGKLEALEELDLSENELTGTIPSDLYNLKELTDLSLMENDLSGEIPQALGDLPNLVSLRLWNNSFTGPLPQKLGSNGKLLQVDVSSNMFTGSIPPDLCHGNKLFKLILFSNKLEHELPASLANCKSLIRFRIQNNRLNGSIPYGFGLLENLTFADFSNNNFSGEIPADIGNAVRLQYLNISQNAFGTSLPENIWNSTRLEIFSASSSKIIGKIPDFISCRSIYKIELQDNNLNSSIPWTIGHCEKLITLNLGRNSLTGIIPWEISTLPGITAIDLSHNSLTGTIPSNFQNCSTIESFNVSYNMLTGPIPSTGTIFPALHPSSFIGNDGLCGEIVSKPCDTDTLTAGAIEVRPQQPRRTAGAIVWIMAGAFGIGLFILVAGTRCFQANYNRRFGGGEEEIGPWKLTAFQRLNFTAEEVLECLTMTDKILGMGSTGTVYKAEMPGGEIIAVKKLWGKYKENIRRRRGVLAEVDVLGNVRHRNIVRLLGCCSNRECTMLLYEYMPNGNLDDLLHGKNKGENLGADWMTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKKSVDSEFGDGNSIVDWVRSKIKIKDGVSQILDKNAGASCVSVREEMIQMLRISLLCTSRNPADRPSMRDVVLMLQEAKPKRKLFGNIIHERNGNCDSSDNIICNRRHGDGDVLLGHKTVDEC* 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2466393 2472009 - CsaV3_4G004030.1 Csa04g00403 526013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00403 1049 SUPERFAMILY L domain-like 75 416 - -
Csa04g00403 1049 SUPERFAMILY Protein kinase-like (PK-like) 729 1001 IPR011009 -
Csa04g00403 1049 ProSitePatterns Serine/Threonine protein kinases active-site signature. 852 864 IPR008271 GO:0004672|GO:0006468
Csa04g00403 1049 ProSitePatterns Protein kinases ATP-binding region signature. 732 755 IPR017441 GO:0005524
Csa04g00403 1049 Gene3D Ribonuclease Inhibitor 43 161 IPR032675 -
Csa04g00403 1049 Gene3D Phosphorylase Kinase; domain 1 707 804 - -
Csa04g00403 1049 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Csa04g00403 1049 Pfam Leucine rich repeat 525 584 IPR001611 GO:0005515
Csa04g00403 1049 PRINTS Leucine-rich repeat signature 311 324 - -
Csa04g00403 1049 PRINTS Leucine-rich repeat signature 571 584 - -
Csa04g00403 1049 Gene3D Transferase(Phosphotransferase) domain 1 805 1019 - -
Csa04g00403 1049 ProSiteProfiles Leucine-rich repeat profile. 142 165 IPR001611 GO:0005515
Csa04g00403 1049 SMART serkin_6 726 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00403 1049 SUPERFAMILY L domain-like 325 634 - -
Csa04g00403 1049 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 11 1021 - -
Csa04g00403 1049 SMART LRR_typ_2 140 164 IPR003591 -
Csa04g00403 1049 SMART LRR_typ_2 356 380 IPR003591 -
Csa04g00403 1049 SMART LRR_typ_2 308 332 IPR003591 -
Csa04g00403 1049 SMART LRR_typ_2 212 236 IPR003591 -
Csa04g00403 1049 SMART LRR_typ_2 571 594 IPR003591 -
Csa04g00403 1049 SMART LRR_typ_2 477 500 IPR003591 -
Csa04g00403 1049 Gene3D Ribonuclease Inhibitor 361 645 IPR032675 -
Csa04g00403 1049 Gene3D Ribonuclease Inhibitor 162 256 IPR032675 -
Csa04g00403 1049 Gene3D Ribonuclease Inhibitor 257 352 IPR032675 -
Csa04g00403 1049 ProSiteProfiles Protein kinase domain profile. 726 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00403 1049 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 1021 - -
Csa04g00403 1049 Pfam Protein kinase domain 729 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00403 1049 Pfam Leucine rich repeat N-terminal domain 42 88 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00250 Csa-Chr2:1699040 Csa04g00403 Csa-Chr4:2466393 0 dispersed
Csa03g02633 Csa-Chr3:24824322 Csa04g00403 Csa-Chr4:2466393 0 dispersed
Csa04g00403 Csa-Chr4:2466393 Csa01g01260 Csa-Chr1:7844689 0 dispersed
Csa07g01394 Csa-Chr7:14158985 Csa04g00403 Csa-Chr4:2466393 8.07E-41 dispersed
Csa04g00403 Csa-Chr4:2466393 Csa06g03068 Csa-Chr6:26350693 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78114 PF00069 Pkinase 1.30E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00403 - - csv:101215776 2085.46