Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa04g00416 | ATGGCCCAGTTGATGAATCTAGCCATTGGAGTGATTTTAGTTGCAGTTTTAGTGGTTCTTCTTCTCATCTTCTTGAACAGAAGAGGAAAAGGGAAGGATAATGATGAATACAATGATATAGAGAGGAAACAAGAAAGGGAGAAAGGGGAAGAAGAAAGAGAAGAATTGGTGAGATTTCAAGGTGGACAAGATCTTACTATTGTGGATATCTTGGAAGCTCCCGGTGAAGTTATTGGGAAAGCCAATCATGGAACTTTGTATAAGGCTTATTTGCAAGGAAGCAATGCAGTTAGGTTACTGAGGTTTCTGAGGCCAGTTTGTACTGCTGGGCTTGAAGATTTTGTCAGTGAAATTGAGTTTTTGGGTTCCATAAGACACCCAAATTTGGTGCCTCTTTTGGGATTCTATTCAGGTCCAAGAGCTGAGAAGCTTCTCATTCATCCATTTTATAGAAGAGGAAATCTAGCTCAGTTCATTAGAGATGGGAACGGTGACTCGCACCGATGGGGAGTTATAAACAAGATCTCGGTTGGTATTGCGAAAGGGTTGGATCATCTTCATACTGGCTTGCAAAAGCCAACAATCCATGGGAATCTTCAATCAAAAAATGTTCTTTTGGACAGAAATTATGAACCGTATGTTTCTGATTTCGGTCTACATTTACTGTTGAATTCCTCATCTGCCCAAGAGGTAGTTGAAGCTTCAGCAGCCAATGGCTACAAAGCTCCTGAGCTGATCAAGATGAAGGATGCAACTGAGGAGACTGATATCTATAGCTATGGGGTGATATTACTCGAGTTACTTTCGGGGAAGGAACCTTTCAATGAAAAACCAACTGTTCCTGATGAGGATTTTTACCTGCCTAGCTTCATGAGAAATGCAGTTCTTGGACATAGAATTGCAGATTTGTTCCATCCAGAAATACTTCTATATAGCAGCATTGATGGAAATCATGTTACTGAAGAAAAGATTCTCAAATTCTTTCAGCTCGCTATGGCTTGTTGCTCTCCTTCTCCTGCTCTTAGACCAAGTATGAAGCAAGTACTACGGAAGCTCAATGAAATCAGAACGTAA | 1074 | 40.6 | MAQLMNLAIGVILVAVLVVLLLIFLNRRGKGKDNDEYNDIERKQEREKGEEEREELVRFQGGQDLTIVDILEAPGEVIGKANHGTLYKAYLQGSNAVRLLRFLRPVCTAGLEDFVSEIEFLGSIRHPNLVPLLGFYSGPRAEKLLIHPFYRRGNLAQFIRDGNGDSHRWGVINKISVGIAKGLDHLHTGLQKPTIHGNLQSKNVLLDRNYEPYVSDFGLHLLLNSSSAQEVVEASAANGYKAPELIKMKDATEETDIYSYGVILLELLSGKEPFNEKPTVPDEDFYLPSFMRNAVLGHRIADLFHPEILLYSSIDGNHVTEEKILKFFQLAMACCSPSPALRPSMKQVLRKLNEIRT* | 358 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2548355 | 2551148 | - | CsaV3_4G004160.1 | Csa04g00416 | 526026 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa04g00416 | 357 | SUPERFAMILY | Protein kinase-like (PK-like) | 75 | 352 | IPR011009 | - | |
| Csa04g00416 | 357 | ProSiteProfiles | Protein kinase domain profile. | 72 | 356 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Csa04g00416 | 357 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED | 5 | 356 | - | - | |
| Csa04g00416 | 357 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 5 | 356 | - | - | |
| Csa04g00416 | 357 | Gene3D | Transferase(Phosphotransferase) domain 1 | 151 | 357 | - | - | |
| Csa04g00416 | 357 | Gene3D | Phosphorylase Kinase; domain 1 | 41 | 149 | - | - | |
| Csa04g00416 | 357 | Coils | Coil | 34 | 54 | - | - | |
| Csa04g00416 | 357 | Pfam | Protein tyrosine and serine/threonine kinase | 76 | 351 | IPR001245 | GO:0004672|GO:0006468 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa04g00416 | Csa-Chr4:2548355 | Csa07g01484 | Csa-Chr7:15185546 | 3.34E-64 | dispersed | |
| Csa04g00416 | Csa-Chr4:2548355 | Csa05g00485 | Csa-Chr5:3151947 | 5.67E-99 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 78115 | PF07714 | PK_Tyr_Ser-Thr | 1.00E-31 | CL0016 | Csa | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa04g00416 | - | - | csv:101206706 | 662.529 |