Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00425 ATGGCTTCCATGCATCAAATCCATCATTATTCATTAATTTCCCTCTTTCTTTTACACGGCCGTTACTGTTGGAAATATGCACAAAGAAAACCTTACTCCAATCTTCCCACCTTGGGTTCTGATTTAACCCACCACCATGGGTTTGTTTTTGGGATTAATGACGTGTACGGTCACGAATTCTCCGTCGTGTCACTGCCGGAACTCACTGTCGGTAACTTAACGGAGAAAACAGACGACACGGCGGTGTTCAGCTCCGACGAATTTCGGATGTACTCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCATGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCAGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCCGGGAGCTGCCCGAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTTCGGCCAGAAACCAAACAGAAGTCTAGTTTTAGTGCCCACCAGCAGCGTGTGGCGGTGGATGCCATTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCGGCGAGGGTGAGCGGCAGCGGACGGAAAAATGAACGGAGTTTTGGATTGGATGTGACGGAATTGGAGTTGCCGCATATTGAATGGATATCCGAATTGTTGAAGTAA 780 50.26 MASMHQIHHYSLISLFLLHGRYCWKYAQRKPYSNLPTLGSDLTHHHGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLK* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2646906 2649183 - CsaV3_4G004250.1 Csa04g00425 526035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00425 259 Gene3D - 123 200 - -
Csa04g00425 259 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 152 IPR000571 GO:0046872
Csa04g00425 259 ProSiteProfiles Zinc finger C3H1-type profile. 127 154 IPR000571 GO:0046872
Csa04g00425 259 PANTHER UNKEMPT FAMILY MEMBER 76 207 IPR045234 -
Csa04g00425 259 SUPERFAMILY CCCH zinc finger 127 157 IPR036855 GO:0046872
Csa04g00425 259 MobiDBLite consensus disorder prediction 191 236 - -
Csa04g00425 259 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54 76 207 - -
Csa04g00425 259 SMART c3hfinal6 162 185 IPR000571 GO:0046872
Csa04g00425 259 SMART c3hfinal6 127 153 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00425 Csa-Chr4:2646906 Csa05g00823 Csa-Chr5:6068842 1.58E-49 dispersed
Csa04g00425 Csa-Chr4:2646906 Csa04g02516 Csa-Chr4:24989859 3.77E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31484 PF00642 zf-CCCH 1.50E-05 CL0537 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00425 - - mcha:111011570 296.975