Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00453 ATGGCGGCTTGTTTTAGTTTCTCTTCTACCATGGATTCCTGTTTCCGTTACTCGTTTTCTAGGGCTGGCCTCAAATCCATCACCACCGATCTTGGCGATGGAACGATCATTCACTGTTGGGCGCCGAAATTTAGAAGAGAGACAAAACCTAATTTGCTTCTCCTTCATGGATTTGGAGCCAACGCAATGTGGCAATGGAATGAATTCATAGCGCCATTGATTCGGTTTTTTAATGTTTACGTTCCTGACCTAATTTTCTTTGGCAATTCTTACACGACTCGTCCGGAGAGGTCTGAGTCGTTTCAAGCTCGTTGTATGATGCGTTTAATGGATTCGTTTGGTGTTCAGAAGGTGAATGTCGTTGGAATTAGCTACGGTGGATTTGTATCGTATAGTATGGCTGTTCAATTTCCTGAGCGATTGGAGAAATTGGTGTTGTGTTGTGCTGGAGTTTGCTTGGAAGAGAAAGATATGGCGGACGGAATGTTCGTCGTGAAGAACGTCGATGAGGCGGCTAGTATTCTACTGCCTCAAACGCCGGCGAAGCTCAAGGAACTCCTCCGACTCACCTTCGTCAAGCCTGCTCGGATTTTGCCAACTTGTATAATCGACGATTTCATCGATGTGATGTGCACAGAGTACAAGCAAGAAAAAGAAGAGTTGATTAAAGAAATACTCAAGGACAGGAACTTAGCAAATCTTCCTAAGATCGATAAGACAACGTTGATAGTATGGGGAGAACAGGATCGAGTATTTCCTTTGGAGTTGGCACATAGATTAAAAAGGCACTTGGGGGGAAATGCAGAATTAGTAGTTGTAAAAGAAGCAGGACATGCCATCAATGCAGAGAAGCCAAAAGAAATGTATAAACACATCAAAGCATTTCTCACCACTCACCCTGACCTAAACCCTTCAACAAACTCTTCTCTTTGTAGTAGCTTTTGA 945 43.28 MAACFSFSSTMDSCFRYSFSRAGLKSITTDLGDGTIIHCWAPKFRRETKPNLLLLHGFGANAMWQWNEFIAPLIRFFNVYVPDLIFFGNSYTTRPERSESFQARCMMRLMDSFGVQKVNVVGISYGGFVSYSMAVQFPERLEKLVLCCAGVCLEEKDMADGMFVVKNVDEAASILLPQTPAKLKELLRLTFVKPARILPTCIIDDFIDVMCTEYKQEKEELIKEILKDRNLANLPKIDKTTLIVWGEQDRVFPLELAHRLKRHLGGNAELVVVKEAGHAINAEKPKEMYKHIKAFLTTHPDLNPSTNSSLCSSF* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2829074 2832700 - CsaV3_4G004530.1 Csa04g00453 526063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00453 314 PRINTS Epoxide hydrolase signature 76 91 IPR000639 GO:0003824
Csa04g00453 314 PRINTS Epoxide hydrolase signature 120 133 IPR000639 GO:0003824
Csa04g00453 314 PRINTS Epoxide hydrolase signature 134 147 IPR000639 GO:0003824
Csa04g00453 314 PRINTS Epoxide hydrolase signature 273 295 IPR000639 GO:0003824
Csa04g00453 314 Pfam alpha/beta hydrolase fold 50 152 IPR000073 -
Csa04g00453 314 PRINTS Alpha/beta hydrolase fold signature 76 91 IPR000073 -
Csa04g00453 314 PRINTS Alpha/beta hydrolase fold signature 120 133 IPR000073 -
Csa04g00453 314 PRINTS Alpha/beta hydrolase fold signature 134 147 IPR000073 -
Csa04g00453 314 PRINTS Alpha/beta hydrolase fold signature 241 255 IPR000073 -
Csa04g00453 314 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 3 304 - -
Csa04g00453 314 SUPERFAMILY alpha/beta-Hydrolases 24 297 IPR029058 -
Csa04g00453 314 PANTHER SI:DKEY-122A22.2 3 304 - -
Csa04g00453 314 Pfam TAP-like protein 236 298 IPR013595 -
Csa04g00453 314 Gene3D alpha/beta hydrolase 9 299 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00453 - - - csv:101220773 625.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02150 Csa-Chr2:19442163 Csa04g00453 Csa-Chr4:2829074 2.59E-127 dispersed
Csa04g00453 Csa-Chr4:2829074 Csa06g02001 Csa-Chr6:18009738 4.98E-69 dispersed
Csa04g00920 Csa-Chr4:6770078 Csa04g00453 Csa-Chr4:2829074 8.62E-08 transposed
Csa04g00453 Csa-Chr4:2829074 Csa06g03150 Csa-Chr6:26872219 5.15E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g977 Blo04g00917 . . . Bpe15g00428 . . . Cmo04g00877 Cmo16g00763 . . . . . . . . . . . . . . . . . . . . . Cone8ag0812 . . . . . Chy07g01245 . . . . . . . Bma03g00989 . Sed05g3619 . . Cma16g00706 . . . . Cpe14g00603 Bhi10g02010 Tan05g1308 Cmetu07g0234 . Hepe08g1015 . . . . . . . . . Lsi07g00150 Csa04g00453 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002597 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 2 2 0 3 2 2 2 2 1 2 2 2 4 2 0 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00453 Csa_Chr04 FPKM 3.815302 5.474995 0.879368 0.826841 1.365728 2.018503 1.704746 1.045068 0.692761 1.196119