Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00455 ATGAAAATGATGTTGGTTAGGATGGGAGAAGTCTATCTTCTAATTCTAGTACTGGCTTGCTATAATTATCTTGCCCTTTCTGATTTTCAAGGTGATGCACTCTATGCATTGAGGACTACATTGAATGCAACAGCAAATCAGCTCACAGATTGGAACCCAAATCAAGTCAATCCATGTACTTGGTCCAATGTTATATGTAGGGGAAACAGTGTGATCTCTGTATCCTTGTCCACAATGGGATTTACTGGAACCTTGTCTCCGCGAATTGGAAGTATAAAATCACTTTCAACTCTCATTTTGCAGGGAAATTACATAAGTGGGGAGATACCAAAGGATTTTGGAAACCTGACAAATTTGGTTAGTTTGGATTTGGGAAATAACAGCCTAACTGGCCAAATACCATCATCCCTGGGTAATCTTAAGAAACTACAGTTCTTAACTCTGAGTCAAAATCGTCTAACGGGGACTATTCCCGACTCACTTTCAACCCTTCCTAGCTTGATTAATCTTCTGCTTGATTCGAATGATCTGAGTGGTCCAATTCCGCAGCAGTTATTTCAAGTTCCAAAATTCAACTTTTCTGCAAACAAGTTAAATTGTGGTGGAAAGTCTCTTCACGCCTGTGCTTCAGACAGTACAAACTCAGGTTCTTCAAATAAACCCAAGGTGGGCCTCATAGTTGGAATAATTGCTGGGTTCACCGTTGCTCTTCTTTTGGTCGGAGTATTATTTTTCTTGTCCAAGGGTAGATATAAAAGCTACAAGCGCGAAGTGTTTGTAGACGTTGCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAGTTGAAAAGATTTGCCTGGAGGGAACTACAGCTAGCTACAGAAAACTTCAGTGAAAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTGTACAAAGGGGTGCTTGCAGATGGCACCAAAGTTGCGGTGAAACGGTTGACTGATTATGAGAGTCCAGGGGGAGATGCAGCGTTTCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTCCATAGAAATCTGTTGCGTCTCATTGGATTCTGCCACAACTCAGACAGAACGCCTATTGGTGTATCCCTTTATGCAGAACTTGAGTGTTGCCTACCGTCTTCGAGGTATAAGTCAAATGCTATTCTAATTCCACGCCTTATGACGAAAGGAAAGTCGGGTGAACTAAAGCCCGGAGAAGCTGTTCTAGATTGGCCTACTCGAAAACGGGTGGCATTGGGCACAGCTCGTGGTTTAGAGTATCTTCATGAACATTGCAACCCAAAGATTATTCATCGAGATGTTAAGGCAGCTAATGTATTGCTTGATGAAGATTTTGAAGCAGTTGTTGGCGATTTTGGCTTAGCAAAGTTGGTTGATGTTAGGAAGACTAATGTCACTACTCAAATTCGAGGGACAATGGGTCACATAGCACCGGAGTACTTATCTACTGGAAAGTCATCCGAAAGGACTGATGTTTTTGGTTATGGTATCATGCTTTTAGAACTTGTTACAGGGCAACGTGCAATTGACTTCTCACGCTTAGAAGAAGAGGACGATGTTTTACTACTCGACCATGTTAAGAAACTAGAAAGGGAGAAACGACTCGATGCCATTGTCGATCGTAATCTAAATAACTACAACATTCAAGAGGTAGAGATGATGATTCAAGTGGCATTGCTGTGCACACAGCCATGCTCGGACGACCGTCCAGCAATGTCACAAGTCGTTCGGATGCTCGAAGGAGAGGGATTAGCAGAGAGGTGGGAAGAATGGCAGCATTTGGAGGTGACTCGCAGACAAGAATACGAAAGATTGCAGAGAAGATTCGAATGGGGAGAAGATTCAATACATAGACAGGATGCAATCCAATTATCTGGTGGAAGATGA 1896 42.41 MKMMLVRMGEVYLLILVLACYNYLALSDFQGDALYALRTTLNATANQLTDWNPNQVNPCTWSNVICRGNSVISVSLSTMGFTGTLSPRIGSIKSLSTLILQGNYISGEIPKDFGNLTNLVSLDLGNNSLTGQIPSSLGNLKKLQFLTLSQNRLTGTIPDSLSTLPSLINLLLDSNDLSGPIPQQLFQVPKFNFSANKLNCGGKSLHACASDSTNSGSSNKPKVGLIVGIIAGFTVALLLVGVLFFLSKGRYKSYKREVFVDVAGEVDRRIAFGQLKRFAWRELQLATENFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCHNSDRTPIGVSLYAELECCLPSSRYKSNAILIPRLMTKGKSGELKPGEAVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQIRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNNYNIQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWEEWQHLEVTRRQEYERLQRRFEWGEDSIHRQDAIQLSGGR* 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2844273 2849966 + CsaV3_4G004550.1 Csa04g00455 526065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00455 631 SUPERFAMILY L domain-like 30 198 - -
Csa04g00455 631 SMART serkin_6 290 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00455 631 Gene3D Transferase(Phosphotransferase) domain 1 395 602 - -
Csa04g00455 631 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 631 - -
Csa04g00455 631 Pfam Protein kinase domain 291 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00455 631 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Csa04g00455 631 ProSiteProfiles Protein kinase domain profile. 290 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00455 631 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Csa04g00455 631 SUPERFAMILY Protein kinase-like (PK-like) 270 583 IPR011009 -
Csa04g00455 631 Gene3D Phosphorylase Kinase; domain 1 259 362 - -
Csa04g00455 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Csa04g00455 631 Gene3D Ribonuclease Inhibitor 28 209 IPR032675 -
Csa04g00455 631 PANTHER LRR RECEPTOR-LIKE KINASE 9 631 - -
Csa04g00455 631 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01663 Csa-Chr2:15780377 Csa04g00455 Csa-Chr4:2844273 0 dispersed
Csa04g00455 Csa-Chr4:2844273 Csa04g00931 Csa-Chr4:6948285 0 dispersed
Csa04g00455 Csa-Chr4:2844273 Csa04g00457 Csa-Chr4:2862038 1.46E-49 proximal
Csa04g00455 Csa-Chr4:2844273 Csa04g00456 Csa-Chr4:2855703 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78116 PF00069 Pkinase 2.60E-38 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00455 - - csv:116403405 1120.92