Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00456 ATGGCAAAACTCTATCTTACTGCTCTAGTTTTGGTTTGCTTTCATTACTTTGCGGTGTCTGATTTTCAAGGTGACGCACTCTATGCATTTAAGAAGGCATTGAATGCAACAAGTAGTCAGCTTGGAGATTGGAACCTAAATCATGTCAATCCATGCAGTAGTTGGTCCAATATTATGTGTAATGGGAACAACGTGACAGCTATAACCTTGCCAACGATGGGATTTACTGGAACCTTGTCTCCAGAAATTGCTGTCATAAAATCTCTTTCAACTCTGAACTTGGAGGGAAATTACATAACTGGAGGGATACCAGCGGAGTTTGGAAACTTGACAAATTTGGTCACTTTGGATCTCGGAAATAACAGCCTAATTGATCAAATACCATCGTCCCTGGGTAATCTTAAGAATCTACGGTTCCTAACTCTGAGTCAAAATCATTTAACTGGGAGTATTCCTGAGACGTTGTCAACCCTTCCTAGCTTGATCAATCTTTTTCTTGATTCGAATAATCTCAGTGGCCAGATTCCGGAGCAATTATTTCAAGTTTCAAAATTCAACTTTTCTGGAAATAAGTTGGATTGCGGCAACAATTCACGTTGGTCCTGTGATTCGGACAGTACAAATTCAGGTGCTTCAAATAAGTCGAAGGTTGGGCTCTTAGCTGGACCTATTTCTGGGTTAATGGTTACTCTTCTTTTGGTCGGATTATTGCTTTTGTTGTGCAAGCATAGATATAAAGGCTACAAGGGTGAAGTCTTCGAAGATGTTCCCGGTGAAATTGATCGAAAAATTGCATTTGGTCAGCTGAAAAGATTTGCATGGAGGGAGCTACAGCTAGCTACAGAAAATTTTAGTGAGGAAAATGTTATAGGACAAGGAGGCTTTGGAAAGGTTTACAAAGGGGTGCTTGCTGATGGCACCAAGGTTGCAGTGAAACAGTCAACTAATTATGAACGCCTTGGGGGAGATGCTTCTTTTCTGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGAAATCTATTGCGGCTGATTGGGTTTTGTACAACTCAGACTGAACGCTTATTGGTGTATCCCTATATGCAGAACTTGAGTGTTGCCAACCGTCTTCGAGAACTTAAGCCTGGGGAACCTATTTTAGATTGGCCTACACGAAAACGTGTGGCATTGGGGACAGCTCGTGGTTTTAGGATATCTTCACGAACATTGCAATCCAAAGATTATTCACCGAGATGTTAA 1239 41.08 MAKLYLTALVLVCFHYFAVSDFQGDALYAFKKALNATSSQLGDWNLNHVNPCSSWSNIMCNGNNVTAITLPTMGFTGTLSPEIAVIKSLSTLNLEGNYITGGIPAEFGNLTNLVTLDLGNNSLIDQIPSSLGNLKNLRFLTLSQNHLTGSIPETLSTLPSLINLFLDSNNLSGQIPEQLFQVSKFNFSGNKLDCGNNSRWSCDSDSTNSGASNKSKVGLLAGPISGLMVTLLLVGLLLLLCKHRYKGYKGEVFEDVPGEIDRKIAFGQLKRFAWRELQLATENFSEENVIGQGGFGKVYKGVLADGTKVAVKQSTNYERLGGDASFLREVEMISVAVHRNLLRLIGFCTTQTERLLVYPYMQNLSVANRLRELKPGEPILDWPTRKRVALGTARGFRISSRTLQSKDYSPRC* 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2855703 2861645 + CsaV3_4G004560.1 Csa04g00456 526066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00456 412 Gene3D Phosphorylase Kinase; domain 1 253 360 - -
Csa04g00456 412 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Csa04g00456 412 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Csa04g00456 412 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 397 - -
Csa04g00456 412 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Csa04g00456 412 SMART LRR_typ_2 134 157 IPR003591 -
Csa04g00456 412 SMART LRR_typ_2 110 133 IPR003591 -
Csa04g00456 412 SMART LRR_typ_2 158 182 IPR003591 -
Csa04g00456 412 Pfam Protein kinase domain 285 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00456 412 ProSiteProfiles Leucine-rich repeat profile. 136 159 IPR001611 GO:0005515
Csa04g00456 412 SUPERFAMILY Protein kinase-like (PK-like) 262 396 IPR011009 -
Csa04g00456 412 Gene3D Ribonuclease Inhibitor 21 204 IPR032675 -
Csa04g00456 412 PANTHER LRR RECEPTOR-LIKE KINASE 4 397 - -
Csa04g00456 412 ProSiteProfiles Protein kinase domain profile. 284 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00456 412 SUPERFAMILY L domain-like 23 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00456 Csa-Chr4:2855703 Csa02g01663 Csa-Chr2:15780377 3.40E-103 dispersed
Csa04g00455 Csa-Chr4:2844273 Csa04g00456 Csa-Chr4:2855703 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78117 PF00069 Pkinase 1.80E-13 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00456 - - csv:101220063 784.637