Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00461 ATGAATTCTATTCCCAACGCGCAACCAATGGCCAATACCTTCTTCCCTCTCTTCCTCTTCTTCCTCCTCTTCCACTTTCCATCCCTTTCTCCGGCCAAACTCCAGCTCAATTTCTACTCCAACTCATGCCCTCAGGCCGAAGCCATAGTCCGTTCTGTGATGCACAAAGCTTTCATCAGAGAACCTCGTAGTGTCGCCTCCGTTATGCGTTTCCAGTTTCACGATTGCTTTGTTAATGGCTGTGATGCTTCTATGTTGCTAGATGATACGCCGACGATGCTTGGAGAGAAACTCTCTCTTGCTAACATTAATTCGCTTAGATCTTACGAAGTCGTTGATGAAGTGAAAGAGACTTTGGAGAAGGTTTGTCCTGGCATTGTTTCTTGTGCAGATATCATAATTATGGCATCCAGAGACGCTGTCTTTTTGACAGGCGGCCCTGATTGGCCAGTAGAACTGGGACGGCTGGACAGTTTAACAGCAAGCCAAGAGGACTCGGACCAAATCATGCCAAGTCCAAGAGCCAATGCAACTTCTCTCATTGACCTTTTCAGCAAATACAACCTCTCCGTCAAAGATTTGGTAGCTCTTTCAGGTTCGCACTCAATTGGCAAAGGCCGATGTTTCTCCATCATGTTTCGACTCTACAACCAATCCGGCACAGGACGACCAGACCCAGCAATCGAGCCTAGGTTCAGAGAAGAGCTCTTCAAGCGATGCCCTCATGGCGTGGATGAAAATGTGACACTCAACCTTGATTCCACACCTTACGTTTTTGACAATCAGTACTTCAAGGACTTGGTTGGTGGGAGGGTTTGTTGA 822 47.2 MNSIPNAQPMANTFFPLFLFFLLFHFPSLSPAKLQLNFYSNSCPQAEAIVRSVMHKAFIREPRSVASVMRFQFHDCFVNGCDASMLLDDTPTMLGEKLSLANINSLRSYEVVDEVKETLEKVCPGIVSCADIIIMASRDAVFLTGGPDWPVELGRLDSLTASQEDSDQIMPSPRANATSLIDLFSKYNLSVKDLVALSGSHSIGKGRCFSIMFRLYNQSGTGRPDPAIEPRFREELFKRCPHGVDENVTLNLDSTPYVFDNQYFKDLVGGRVC* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2879585 2882519 - CsaV3_4G004610.1 Csa04g00461 526071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00461 273 CDD secretory_peroxidase 33 271 IPR033905 GO:0004601|GO:0042744
Csa04g00461 273 SUPERFAMILY Heme-dependent peroxidases 33 271 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 PRINTS Plant peroxidase signature 43 62 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 PRINTS Plant peroxidase signature 67 87 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 PRINTS Plant peroxidase signature 107 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 PRINTS Plant peroxidase signature 126 136 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 PRINTS Plant peroxidase signature 145 160 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 PRINTS Plant peroxidase signature 250 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 Gene3D - 37 171 - -
Csa04g00461 273 PANTHER PEROXIDASE 17 18 271 - -
Csa04g00461 273 ProSiteProfiles Plant heme peroxidase family profile. 33 273 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 PANTHER PEROXIDASE 72-RELATED 18 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 PRINTS Haem peroxidase superfamily signature 65 79 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 PRINTS Haem peroxidase superfamily signature 127 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 PRINTS Haem peroxidase superfamily signature 145 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 PRINTS Haem peroxidase superfamily signature 252 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 Gene3D Peroxidase, domain 2 172 271 - -
Csa04g00461 273 Pfam Peroxidase 50 271 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00461 273 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00461 Csa-Chr4:2879585 Csa04g00543 Csa-Chr4:3606838 1.45E-79 dispersed
Csa04g00461 Csa-Chr4:2879585 Csa06g03285 Csa-Chr6:27565675 1.64E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00461 K00430 - csv:116406089 526.939