Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00470 ATGATGGTGGAGTTCCATGGAGAAATCCGATCCCATAACGATGAAGACGACCGAGACCAAGAACCAGAAGAGGAAATTAGCTACGATGATCTCAAGAAACGAATGTGGAGAGATCGACAACGGATGAAGAAGATGAAGGAGAGGCATGATGAAGAAGAGCCTGAATCTGCTGCAAGAGAAGAAGCTTCTCGCCGTAAGAAAATGGCTAGAGCTCAAGATTCCATTCTTAAGTGCATGGATAAAATCATGGAAGCTTGTAAAGCTCAAGGGTTTGTTTATGGAATCGTTCCGGAAAAGGGAAAGCCGGTCACTGGCTCTTCCGAGAGCCTCCGTGAATGGTGGAAAGATGATGTCCGATTCGAACAAGATGCTCCAATGGCTATAGCGAAATTTCTCCCCAAAGTAATTGAAGAATCAGGGATTGATCCCAATTCGTTTTTGCATTTACTCACCGATTTACAGGACACAACATTGGGATCCATTCTCTCCGCTTTGATGCAGCACTGTATTCCTCCACAGAGGAAATTCCCACTGGAAAAGGGTTTAGCGCCGCCATGGTGGCCGACGGGTAACGAGCTTTGGTGGGGTGAACAGGGCGCCGCCGGTGGTCATGGTGTTCCGCCGTATAAAAAGCCCCACGATCTCAAAAAGGCGTGGAAAATCAGTGTCTTGGCGGCGGTGATTAAACACATGTCGCCTGATTTAGACAACATGAAGAAATTAATTAGGCAATCGAAGAATTTACAAGCGAAAATGACAGCGAAAGAGACAATCACCTGGGCTAAAGTTGTGAATCAAGAAGAAGCTCTGATGAACTTAACAAAAAAGAGCTTAAGAATCACCGACGAAGAAGAAGACAAAGAAGAAGAACACAACAAAAACAGAGATAAACAGAGCAGCGATGAGATTATGACGAAACGAAAGTGTGTATTCGAACAAGAACCCATATTGGAATCGTTGTTATACCCTTGCCAGAATCAATGGTGTCCGCAGAGTGAAGCGGTAATGGGATTTATGGACAAGAAAGCAAGAACAGAGCATGAGACACAGTGCATTTGCGGAGGAGAGAGGTCAGAGGAATTTTCGGACGAGCAATCGATGGACACGCATTTGAAGAGCGTGGTGGAGTGGATGAACTGGGAGCTGGGGAGGGCGGAGGCGGGGAGGGAGGAGGCGAGGATAGAAGATGCTGGAGATGGGTCGGGGAGCAGCACGGCGGAGGATTACGGGAGTGGGTACTGGAATATGGATTTGAATGCGAGTCCGGCGGAGGATTTGAGTGGGCAACAACAAGATTCTACTTCCATTTGGGATTTGAGATATGATTGGGGAGCTGAAGAATAA 1344 46.88 MMVEFHGEIRSHNDEDDRDQEPEEEISYDDLKKRMWRDRQRMKKMKERHDEEEPESAAREEASRRKKMARAQDSILKCMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWKDDVRFEQDAPMAIAKFLPKVIEESGIDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGAAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDLDNMKKLIRQSKNLQAKMTAKETITWAKVVNQEEALMNLTKKSLRITDEEEDKEEEHNKNRDKQSSDEIMTKRKCVFEQEPILESLLYPCQNQWCPQSEAVMGFMDKKARTEHETQCICGGERSEEFSDEQSMDTHLKSVVEWMNWELGRAEAGREEARIEDAGDGSGSSTAEDYGSGYWNMDLNASPAEDLSGQQQDSTSIWDLRYDWGAEE* 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2949871 2951571 - CsaV3_4G004700.1 Csa04g00470 526080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00470 447 MobiDBLite consensus disorder prediction 1 67 - -
Csa04g00470 447 MobiDBLite consensus disorder prediction 43 67 - -
Csa04g00470 447 Gene3D - 140 277 IPR023278 GO:0003700|GO:0005634
Csa04g00470 447 Gene3D - 57 138 IPR023278 GO:0003700|GO:0005634
Csa04g00470 447 PANTHER ETHYLENE INSENSITIVE 3-LIKE 5 PROTEIN 14 442 - -
Csa04g00470 447 Pfam Ethylene insensitive 3 29 268 IPR006957 GO:0005634
Csa04g00470 447 MobiDBLite consensus disorder prediction 281 302 - -
Csa04g00470 447 Coils Coil 28 48 - -
Csa04g00470 447 SUPERFAMILY DNA-binding domain of EIN3-like 147 271 IPR023278 GO:0003700|GO:0005634
Csa04g00470 447 MobiDBLite consensus disorder prediction 1 17 - -
Csa04g00470 447 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 442 IPR006957 GO:0005634
Csa04g00470 447 MobiDBLite consensus disorder prediction 389 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00470 K14514 EIN3; ethylene-insensitive protein 3 - csv:101210698 874.389
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00470 Csa-Chr4:2949871 Csa06g00461 Csa-Chr6:3935880 2.16E-112 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g03099 . 2 629 EIL Transcription Factor Family AT2G27050 58.0 3.6e-189 658.3
Csa06g00461 . 7 589 EIL Transcription Factor Family AT2G27050 57.9 8.3e-170 594.0
Csa01g03142 . 1 247 EIL Transcription Factor Family AT2G27050 67.6 3.3e-94 342.8
Csa01g03142 . 1 533 EIL Transcription Factor Family AT1G73730 55.2 2.1e-146 516.2
Csa01g03099 . 36 334 EIL Transcription Factor Family AT1G73730 63.3 2.2e-103 373.2
Csa06g00461 . 37 334 EIL Transcription Factor Family AT1G73730 61.6 6.4e-103 371.7
Csa04g00470 . 23 271 EIL Transcription Factor Family AT1G73730 55.5 3.0e-76 283.1
Csa01g03099 . 3 629 EIL Transcription Factor Family AT3G20770 61.9 2.8e-208 721.8
Csa06g00461 . 6 526 EIL Transcription Factor Family AT3G20770 61.5 2.3e-173 605.9
Csa01g03142 . 1 247 EIL Transcription Factor Family AT3G20770 69.5 9.1e-98 354.8
Csa01g03142 . 38 243 EIL Transcription Factor Family AT5G65100 59.3 4.2e-70 262.7
Csa04g00470 . 23 364 EIL Transcription Factor Family AT5G10120 56.1 6.4e-104 374.8
Csa01g03142 . 1 245 EIL Transcription Factor Family AT5G10120 55.2 1.3e-72 270.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31488 PF04873 EIN3 1.70E-109 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00470 Csa_Chr04 FPKM 81.928673 90.039581 55.487614 56.570339 43.722549 47.671204 43.409691 71.143974 75.972816 70.62413