Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00470 ATGATGGTGGAGTTCCATGGAGAAATCCGATCCCATAACGATGAAGACGACCGAGACCAAGAACCAGAAGAGGAAATTAGCTACGATGATCTCAAGAAACGAATGTGGAGAGATCGACAACGGATGAAGAAGATGAAGGAGAGGCATGATGAAGAAGAGCCTGAATCTGCTGCAAGAGAAGAAGCTTCTCGCCGTAAGAAAATGGCTAGAGCTCAAGATTCCATTCTTAAGTGCATGGATAAAATCATGGAAGCTTGTAAAGCTCAAGGGTTTGTTTATGGAATCGTTCCGGAAAAGGGAAAGCCGGTCACTGGCTCTTCCGAGAGCCTCCGTGAATGGTGGAAAGATGATGTCCGATTCGAACAAGATGCTCCAATGGCTATAGCGAAATTTCTCCCCAAAGTAATTGAAGAATCAGGGATTGATCCCAATTCGTTTTTGCATTTACTCACCGATTTACAGGACACAACATTGGGATCCATTCTCTCCGCTTTGATGCAGCACTGTATTCCTCCACAGAGGAAATTCCCACTGGAAAAGGGTTTAGCGCCGCCATGGTGGCCGACGGGTAACGAGCTTTGGTGGGGTGAACAGGGCGCCGCCGGTGGTCATGGTGTTCCGCCGTATAAAAAGCCCCACGATCTCAAAAAGGCGTGGAAAATCAGTGTCTTGGCGGCGGTGATTAAACACATGTCGCCTGATTTAGACAACATGAAGAAATTAATTAGGCAATCGAAGAATTTACAAGCGAAAATGACAGCGAAAGAGACAATCACCTGGGCTAAAGTTGTGAATCAAGAAGAAGCTCTGATGAACTTAACAAAAAAGAGCTTAAGAATCACCGACGAAGAAGAAGACAAAGAAGAAGAACACAACAAAAACAGAGATAAACAGAGCAGCGATGAGATTATGACGAAACGAAAGTGTGTATTCGAACAAGAACCCATATTGGAATCGTTGTTATACCCTTGCCAGAATCAATGGTGTCCGCAGAGTGAAGCGGTAATGGGATTTATGGACAAGAAAGCAAGAACAGAGCATGAGACACAGTGCATTTGCGGAGGAGAGAGGTCAGAGGAATTTTCGGACGAGCAATCGATGGACACGCATTTGAAGAGCGTGGTGGAGTGGATGAACTGGGAGCTGGGGAGGGCGGAGGCGGGGAGGGAGGAGGCGAGGATAGAAGATGCTGGAGATGGGTCGGGGAGCAGCACGGCGGAGGATTACGGGAGTGGGTACTGGAATATGGATTTGAATGCGAGTCCGGCGGAGGATTTGAGTGGGCAACAACAAGATTCTACTTCCATTTGGGATTTGAGATATGATTGGGGAGCTGAAGAATAA 1344 46.88 MMVEFHGEIRSHNDEDDRDQEPEEEISYDDLKKRMWRDRQRMKKMKERHDEEEPESAAREEASRRKKMARAQDSILKCMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWKDDVRFEQDAPMAIAKFLPKVIEESGIDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGAAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDLDNMKKLIRQSKNLQAKMTAKETITWAKVVNQEEALMNLTKKSLRITDEEEDKEEEHNKNRDKQSSDEIMTKRKCVFEQEPILESLLYPCQNQWCPQSEAVMGFMDKKARTEHETQCICGGERSEEFSDEQSMDTHLKSVVEWMNWELGRAEAGREEARIEDAGDGSGSSTAEDYGSGYWNMDLNASPAEDLSGQQQDSTSIWDLRYDWGAEE* 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2949871 2951571 - CsaV3_4G004700.1 Csa04g00470 526080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00470 447 MobiDBLite consensus disorder prediction 1 67 - -
Csa04g00470 447 MobiDBLite consensus disorder prediction 43 67 - -
Csa04g00470 447 Gene3D - 140 277 IPR023278 GO:0003700|GO:0005634
Csa04g00470 447 Gene3D - 57 138 IPR023278 GO:0003700|GO:0005634
Csa04g00470 447 PANTHER ETHYLENE INSENSITIVE 3-LIKE 5 PROTEIN 14 442 - -
Csa04g00470 447 Pfam Ethylene insensitive 3 29 268 IPR006957 GO:0005634
Csa04g00470 447 MobiDBLite consensus disorder prediction 281 302 - -
Csa04g00470 447 Coils Coil 28 48 - -
Csa04g00470 447 SUPERFAMILY DNA-binding domain of EIN3-like 147 271 IPR023278 GO:0003700|GO:0005634
Csa04g00470 447 MobiDBLite consensus disorder prediction 1 17 - -
Csa04g00470 447 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 442 IPR006957 GO:0005634
Csa04g00470 447 MobiDBLite consensus disorder prediction 389 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00470 Csa-Chr4:2949871 Csa06g00461 Csa-Chr6:3935880 2.16E-112 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31488 PF04873 EIN3 1.70E-109 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00470 K14514 - csv:101210698 874.389