Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00482 ATGTCGATCGCTAACGCCAACACGTCTCCGACTATGTCCGGCGTCTCAACGACGGTCGACAACACCAGCACCCCTGCAGACAGGGCTCGGTGGGTGGCAAACCCACCAGACCCACCAGGGATATGTCGAGACCTCATCGACTGGCTTCGCCAAACCATGTTTCCCGATCCCACCAAGCTTTTCCCACTCAAGAACAAGACTGGAACTGCGGTCCTGGGAAGGGTCTTGAAGGGTGTTTTCCCTATCCTCTGTTGGGGGCAGAGCTATAATCTTGGAAAGTTTAAAAATGATGTCTTGGCTGGTTTGACACTTGCTAGCCTCTGCATTCCTCAGAGTATTGGTTACGCAAATCTGGCTAAGCTTGATCCTCAATATGGGCTTTATACGAGCATTGTGCCGCCGTTGGTTTATGCAATATTGGGAAGTTCGAGGGAAATAGCGATCGGTCCGGTCGCTATAATATCTATGCTTTTGCCGACGATGATTCAGAAAATTCAAGATCCCGCCGCCGATCCTTTTGCCTATAGAAACCTTGTCTTCACCACCACTTTCTTCGCCGGAATCTTTCAAGCCGCCTTTGGACTTTTCCGGTTGGGATTTATGGTGGATTTTCTATCACAAGCTGCCATAGTTGGGTTCATGGGTGGAGCTGCCATTGTAATTGGACTTCAACAACTCAAAGGATTGCTTGGAATCACTCACTTCACTAATAAAACTGATATCATCTCTGTTATGGAAGCTGTTTTCGCATCATTCCATCATCTTAATAATGATCAATGGAATCCCTTGAACTTCATCATTGGCTCTTCATTCCTTTCCTTCATCCTCATCACCAAATTATTGGGGAAGAAGTACAAGAAAGTATTCTGGTTACCAGCCATGGCTCCATTGGTGTCCGTAATCCTATCAACACTTTTGGTGTTCCTCACAAGAGCCGATGAACATGGCGTCAAGATCGTCAAACGAGTCCCCCCTGGCCTTAACCCAATCTCCACTCAAAACATCCAAATCCACACCCCTCATATCTCCCAAATCCTCAATGCTGCCCTCATCGTCGCCGTCGTAGCTCTCACTGAGGCGATTGCTGTGGGGAGATCATTGGCATCCATGAAAGGATACAACATTGATGGGAACAAAGAAATGGTTGCGTTAGGCTTCATGAACCTAGCTGGATCTCTTACTTCTTGCTATACAGCAACAGGTTCTCTGTCACGTTCAGCCGTTAATTTCAGTGCCGGTTGCGAGACGCCAGTTTCAAATGTAGTGATGGCGGTGACGGTGATGATATCATTGAAGATGTTTACCAAGCTCCTCTACTTCACTCCCAACGCCATCTTGGCTTCCATTATTCTCTCAGCTCTTCCTGGCCTCGTTGACATTCACCAAGCTTACAATATATGGAAGATCGACAAGCTTGACTTCTTGGCCTGTCTCGCAGCTTTTTTTGGAGTTCTCTTTCTATCTGTTGAATTCGGCCTCCTCCTTTCGTTGGTGATATCATTTGCAAAGATAATAGTAACCTCAATCAAACCTGGGACAGAGATATTGGGTAAAATCCCTGGAACCGATACCTTTTGTGATATTCATCAATATCCAATGGCTCTCAACACTCCTGGAGTCCTCATCGTTCGTGTTAAATCTGGCTTACTTTGCTTTGCAAATGCCAATTTCGTAAAGGACAGGATTTTGAGGTTCATCAGCAGCCAAGAAGCATCAGGAAAGGGAATTACTCAATTCCTAGTCATTGATCTCTCCAATTTAATGAACATTGACACTTCAGGAATTGCTTCTCTTGAAGAGCTGCATAAAAATTTGGCAACTAGTGGAATAGAGATGGCCATAGCAAATCCAAAATGGCAAGTGATTCACAAGCTAAAGGTATCGAATTTTGTTGCCAAACTCAAAGGGAGAGTTTTCTTAAGTGTTGGGGAAGCTGTGGATGCATGCCTTTCAGCTAAAATGGGAGCTGCCATCTAA 1977 45.42 MSIANANTSPTMSGVSTTVDNTSTPADRARWVANPPDPPGICRDLIDWLRQTMFPDPTKLFPLKNKTGTAVLGRVLKGVFPILCWGQSYNLGKFKNDVLAGLTLASLCIPQSIGYANLAKLDPQYGLYTSIVPPLVYAILGSSREIAIGPVAIISMLLPTMIQKIQDPAADPFAYRNLVFTTTFFAGIFQAAFGLFRLGFMVDFLSQAAIVGFMGGAAIVIGLQQLKGLLGITHFTNKTDIISVMEAVFASFHHLNNDQWNPLNFIIGSSFLSFILITKLLGKKYKKVFWLPAMAPLVSVILSTLLVFLTRADEHGVKIVKRVPPGLNPISTQNIQIHTPHISQILNAALIVAVVALTEAIAVGRSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMAVTVMISLKMFTKLLYFTPNAILASIILSALPGLVDIHQAYNIWKIDKLDFLACLAAFFGVLFLSVEFGLLLSLVISFAKIIVTSIKPGTEILGKIPGTDTFCDIHQYPMALNTPGVLIVRVKSGLLCFANANFVKDRILRFISSQEASGKGITQFLVIDLSNLMNIDTSGIASLEELHKNLATSGIEMAIANPKWQVIHKLKVSNFVAKLKGRVFLSVGEAVDACLSAKMGAAI* 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3099874 3105733 + CsaV3_4G004820.1 Csa04g00482 526092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00482 658 Gene3D STAS domain 510 652 IPR036513 -
Csa04g00482 658 ProSitePatterns SLC26A transporters signature. 123 144 IPR018045 GO:0008271|GO:0008272
Csa04g00482 658 Pfam Sulfate permease family 94 479 IPR011547 GO:0016021
Csa04g00482 658 ProSiteProfiles STAS domain profile. 547 649 IPR002645 -
Csa04g00482 658 CDD STAS_SulP_like_sulfate_transporter 531 640 - -
Csa04g00482 658 PANTHER SULFATE TRANSPORTER 2.2 26 655 IPR030315 GO:0008272|GO:0015116
Csa04g00482 658 PANTHER SULFATE TRANSPORTER 26 655 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa04g00482 658 SUPERFAMILY SpoIIaa-like 538 649 IPR036513 -
Csa04g00482 658 MobiDBLite consensus disorder prediction 1 33 - -
Csa04g00482 658 TIGRFAM sulP: sulfate permease 81 640 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa04g00482 658 MobiDBLite consensus disorder prediction 1 28 - -
Csa04g00482 658 Pfam STAS domain 531 645 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00482 Csa-Chr4:3099874 Csa05g01553 Csa-Chr5:18148308 0 dispersed
Csa04g00482 Csa-Chr4:3099874 Csa07g01694 Csa-Chr7:17436452 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00482 K17469 - csv:101213063 1263.44