Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00489 ATGAACTCATCATCCACTAAATTTTACAATCCAGGAAGGATGGGACTCTATGAACCTATCCACCATATTGGAATGTGGGGTGAAACTTTTAGAGCCAATGCCAATTTAGATCCACCCTCCTCTTTTATCATCGAAGCTGATCCCAAATTAGAAAATCAGTCAGATGATGCTTCACTTGGCTCACTTGGAGATCCTCACGTATATGACCAAGATGATACCAAACGAATTGATAAGATTCAAAGAAGGCTGGCACAAAATCGGGAAGCAGCTCGCAAAAGTCGCCTACGGAAAAAGGCTTATATTAAGCAATTGGAAACAAGCCGCATAAAGCTCATTCAATTGGAGCAAGAACTTGAAAAGGCAAGACAACAAGGTCTCTTGGCTGGATCCCGATTTGATAATAACCAATTGGGTTTATCAGGAACCACAAATTCAGGCATCTTCGCATTTGAATCAGAGTATGAGCAATGGGTGGAAGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCATGCTGATATTACTGATATCGAGCTTCGAATACTCGTGGAAAATGCAATGAGACATTACTTTAAATTTTTTCGCATGAAAGCTAAGGCTGCAAAAGCCGACGTCTCTTACATAATGTCAGGCATGTGGAAGACATCCGCCGAAAGACTTTTCTTATGGATAGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGGAGACATTAACCGAACAACAAATTTCAGAAACGGGTAGCCTTAGAAAATCGTGTCTACAGGCAGAAGATGCTCTTAGACAAGGTATGGAAAAACTACAACAAAATCTATTTGAGAGCGTAGTGGCTGGTCAGCTAGGTGAAGGAAGTTATCCCCTACAGATGACTGCTGCAATGGAGAGATTAGAAGCGCTCGTTAGCTTTGTGAATCAGGAAACATTGCAACAGATGTACAAAATTCTAACGACTCGACAATCTGCTCAAGGCCTTCTTACACTGGGGGAGTTTTTCCAACGACTCCGAGCATTGAGCTCACTTTGGGGTAATCGTCCTTGTGAGCCTGCATAG 1071 42.67 MNSSSTKFYNPGRMGLYEPIHHIGMWGETFRANANLDPPSSFIIEADPKLENQSDDASLGSLGDPHVYDQDDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRIKLIQLEQELEKARQQGLLAGSRFDNNQLGLSGTTNSGIFAFESEYEQWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLETLTEQQISETGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSYPLQMTAAMERLEALVSFVNQETLQQMYKILTTRQSAQGLLTLGEFFQRLRALSSLWGNRPCEPA* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3209914 3214851 + CsaV3_4G004890.1 Csa04g00489 526099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00489 356 ProSiteProfiles DOG1 domain profile. 147 351 IPR025422 GO:0006351|GO:0043565
Csa04g00489 356 PANTHER TRANSCRIPTION FACTOR TGA9 1 355 - -
Csa04g00489 356 Coils Coil 97 124 - -
Csa04g00489 356 Pfam Seed dormancy control 164 239 IPR025422 GO:0006351|GO:0043565
Csa04g00489 356 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Csa04g00489 356 PANTHER TRANSCRIPTION FACTOR TGA1 1 355 - -
Csa04g00489 356 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Csa04g00489 356 Gene3D - 77 127 - -
Csa04g00489 356 Pfam bZIP transcription factor 77 111 IPR004827 GO:0003700|GO:0006355
Csa04g00489 356 SMART brlzneu 74 136 IPR004827 GO:0003700|GO:0006355
Csa04g00489 356 SUPERFAMILY Leucine zipper domain 79 120 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02536 Csa-Chr2:22258809 Csa04g00489 Csa-Chr4:3209914 1.67E-126 dispersed
Csa04g00489 Csa-Chr4:3209914 Csa06g00336 Csa-Chr6:2598017 1.99E-95 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31489 PF14144 DOG1 1.80E-28 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00489 K14431 - csv:116401613 690.263