Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00492 ATGTTTGGTTTCTCTCCAGAATTAAACAATCCCAATGGAGCAATTGTTGGAGGAGTTGCTGCAGGTGCTGCTTTACTTTTTGCTACACCGGCTATCATATTTGTCTATTGGCATCGGAGGAAATCACGAGAAATATTCTTCGATGTCCCTGCGGAAGAGGACTCAGAGATCAACTTGGGGCAGCTGAAGCGGTTTTCTCTGAGAGACTTACAAGTTGCAACAGATAACTTCTGCAACAAAAATATTCTTGGTCGAGGTGGATTCGGTAAAGTCTATAGGGGACGTTTGGCTGATGGCTCGTTAGTAGCAGTAAAAAGGCTCAAAGAAGAGCGTACGCCAGGTGGGGAGTTACAATTCCAAACAGAAGTAGAGATGATTAGCATGGCAGTGCACCGAAATCTTCTGCGACTACATGGATTTTGTACAACATCGAGTGAACGCCTCCTTGTTTATCCTTATATGGCCAACGGAAGTGTTGCATCATGTTTAAGAGAACGTCCACAGTCTGAAGCTCCTCTCGACTGGCCAACTAGAAAGAAAGTTGCATTAGGCTCTGCGAGAGGTCTTTCTTATTTACATGATGGATGTGATCCAAAAATCATCCATCGTGATGTGAAGGCTGCAAATATTCTACTAGATGAGGAATTCGAGGCTGTTGTGGGTGATTTTGGTCTTGCAAAGTTAATGGATTACAAGGATACTCATGTTACAACAGCAGTAAGAGGTACAATTGGGCATATAGCTCCAGAGTATCTCTCAACTGGGAAATCATCTGAAAAGACTGATGTCTTTGGTTATGGCATTATGCTTTTGGAGCTAATAACCGGACAAAGGGCTTTCGATCTTGCTCGACTGGCAAACGATGAAGATGTCATGCTGCTTGATTGGGAGAACTATGATGAGATTGAAGTTGAGCAAATAATCCAAGTAGCACTTCTCTGCACACAGAGCTCGCCTATGGAACGACCCAAAATGTCTGATGTGGTGAGAATGCTGGAAGGAGATGGGTTGGCTGAGCGATGGGAGGAATGGCAGCGAGTGGAGGTAGTTTACCATGAAACAGAATTGACATCTTCTCAAACTTCAGAATGGATGGTTGATTCGACTGAAAACGTTCGTGCTTTTGAATTATCTGGTCCTAGATAA 1146 43.63 MFGFSPELNNPNGAIVGGVAAGAALLFATPAIIFVYWHRRKSREIFFDVPAEEDSEINLGQLKRFSLRDLQVATDNFCNKNILGRGGFGKVYRGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLHGFCTTSSERLLVYPYMANGSVASCLRERPQSEAPLDWPTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWENYDEIEVEQIIQVALLCTQSSPMERPKMSDVVRMLEGDGLAERWEEWQRVEVVYHETELTSSQTSEWMVDSTENVRAFELSGPR* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3226997 3228578 - CsaV3_4G004920.1 Csa04g00492 526102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00492 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Csa04g00492 381 SUPERFAMILY Protein kinase-like (PK-like) 62 370 IPR011009 -
Csa04g00492 381 PANTHER - 6 381 - -
Csa04g00492 381 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 381 - -
Csa04g00492 381 Gene3D Transferase(Phosphotransferase) domain 1 154 352 - -
Csa04g00492 381 Gene3D Phosphorylase Kinase; domain 1 46 153 - -
Csa04g00492 381 SMART serkin_6 77 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00492 381 Pfam Protein tyrosine and serine/threonine kinase 80 332 IPR001245 GO:0004672|GO:0006468
Csa04g00492 381 ProSiteProfiles Protein kinase domain profile. 77 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00492 381 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00492 Csa-Chr4:3226997 Csa06g00289 Csa-Chr6:2107583 0 dispersed
Csa04g00492 Csa-Chr4:3226997 Csa05g02551 Csa-Chr5:26917973 4.08E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78118 PF07714 PK_Tyr_Ser-Thr 3.40E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00492 K13418 - csv:101208905 705.286