Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00494 ATGAGCGGCCAGAAACGTAACTTCATGGCCACCACCGCTGTCGTCAGCCCCGTTGGCAGTCCCACCTCCGGCAACATCTCCGACAGCTCAACAAAAGAACAAGACAGGTTCCTTCCGATCGCAAACGTGAGCCGAATCATGAAGAAATCTCTTCCGGCTAACGCGAAAATCTCGAAAGAAGCTAAAGAAACAGTCCAAGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGGGAAGCCTCCGACAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGCTGTGGGCTATGACTACTTTAGGGTTCGAGAATTACGTTGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAAAAACATTCTTTAGCTAGACAAGAGGATCCTTCTTTGTCTCCGCCAAAATCCGCCGCTGAACACATTATTGGAGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCATTGGGGAATCAAATTCAAAATCAGGGAAATCAGAAGAGTTTCAACATAATCGATGGCGTTGGATTTGGGGAAAATTTGAGGGGTTTCAATATAAATGGAGTTCATGAAAATGGAGAAGGAAATCGAGCTCGAGCCATGGCGGCTCATCTTCAACAGAGCTCCGGTACTTACTTGGTTTTTGCTTAA 693 45.17 MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGTYLVFA* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3242143 3243325 + CsaV3_4G004940.1 Csa04g00494 526104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00494 230 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
Csa04g00494 230 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 20 186 - -
Csa04g00494 230 Gene3D Histone, subunit A 24 148 IPR009072 GO:0046982
Csa04g00494 230 MobiDBLite consensus disorder prediction 13 32 - -
Csa04g00494 230 SUPERFAMILY Histone-fold 34 136 IPR009072 GO:0046982
Csa04g00494 230 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 20 186 IPR027113 GO:0001228|GO:0006355|GO:0016602
Csa04g00494 230 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
Csa04g00494 230 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Csa04g00494 230 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Csa04g00494 230 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Csa04g00494 230 Coils Coil 113 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00494 Csa-Chr4:3242143 Csa05g00631 Csa-Chr5:4179690 2.99E-55 dispersed
Csa04g00494 Csa-Chr4:3242143 Csa06g00967 Csa-Chr6:7816316 5.47E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31491 PF00808 CBFD_NFYB_HMF 7.10E-27 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00494 K08065 - csv:116406241 448.358