Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00509 ATGTTCCACACAGAGCTTTTACTCTGTTTTCTCCCTTCTATTTTAGCTCTCTTCCTCTTCCTCATTCTCCTCAAACGAAAGAGAAATGCCGTCCATCTTGATCTCCCCCCCGGCAGCATGGGTTGGCCGTTTCTCGGCGAGACCATCGGTTATCTCCGGCCCTATTCCGCTACCACCATCGGAGCTTTCATGGAGAATCACATCAGGAGATATGGTAAAGTGTATAAGTCGAACTTGTTCGGAGAGCCAACGGTGGTGTCGGCCGATGCCGGACTGAATCGATATATTCTGCAAAACGAAGGGCGGTTGTTTGAATGTAGCTACCCGCGGAGTATCGGTGGGATCCTAGGGAAATGGTCGATGCTGGTTACCGTCGGCGACATGCACCGGGACATGAGAATGATATCCTTGAATTTTCTCAGTCAGAGTAGGCTTAAGAATAATCTGTTGAAGGAAGTTGAGAACCAGACGCTTCTTGTTCTTCGTTCTTGGAAAGATTCTTCCACGTTTTTGGCGCAGGACGAAGCCAAAAAGTTCACTTTCAATTTAATGGCGAAACATATCATGAGTTTGGATCCATGGAAGTTGGAGACGGAGATGTTGAAGAAGGAGTATGTGACTTTCATGAAAGGAGTGATTTCTCCGCCGCTGAATCTTCCCGGAACGCCGTACAGACGAGCTCTTAAGTCTCGGTCGACGATCTTGAAGTTCATCGAACGGAAAATGGAGGAGCGGAAGTTGAAAATAGAAGCCGACGGCGGTGAGTTCGAGGATGATGATCTACTCGGTTGGGCATTGAAGCACTCAAATCTCTCAACGGAGCAAATTCTCGACCTAATTCTTAGTTTGCTGTTCGCCGGCCACGAAACTTCTTCAGTCGCCATAGCTTTAGCCATCTTCTTCCTCTCCGGCAGTCCAGCTGCCGTTCAACAGTTGACGGAAGAACACCTGGAAATCACCAGAGGCAAAAAGCGATTGGGAAAAACAGAATTGGATTGGGAAGATTACAAGAAAATGGAATTCACGCAAAGTGTGATTAACGAAACGCTTCGTCTTGGAAACGTCGTGAGATTTCTTCATAGAAAGGCCCTGAAGGATGTACGGTACAGAGGTTATTTCATTCCACGTGGATGGAAAGTGCTTCCTGTGATTTCTTCAGCTCATTTGGATCCTCTAGTTTTTGACCATCCTCATCACTTCAATCCATGGAGATGGCAGCAAATGAATGGTTCATCATTGGGTATCCCGAGCACAACAATAACCAATAATTTCATGCCATTTGGCGGAGGACCGCGATTATGCACTGGCTCAGAACTAGCAAAGCTTGAAATGGCCATTTTTATCCATCATTTGGTTTTGAACTACCAATGGGAATTGGTAGGTTCAGATCAAGCTTTTGCTTATCCTTTTGTTGATTTCCCTAAAGGTCTACCAATCAGAGTCCGCCATCGCACACTCATGTAA 1464 46.17 MFHTELLLCFLPSILALFLFLILLKRKRNAVHLDLPPGSMGWPFLGETIGYLRPYSATTIGAFMENHIRRYGKVYKSNLFGEPTVVSADAGLNRYILQNEGRLFECSYPRSIGGILGKWSMLVTVGDMHRDMRMISLNFLSQSRLKNNLLKEVENQTLLVLRSWKDSSTFLAQDEAKKFTFNLMAKHIMSLDPWKLETEMLKKEYVTFMKGVISPPLNLPGTPYRRALKSRSTILKFIERKMEERKLKIEADGGEFEDDDLLGWALKHSNLSTEQILDLILSLLFAGHETSSVAIALAIFFLSGSPAAVQQLTEEHLEITRGKKRLGKTELDWEDYKKMEFTQSVINETLRLGNVVRFLHRKALKDVRYRGYFIPRGWKVLPVISSAHLDPLVFDHPHHFNPWRWQQMNGSSLGIPSTTITNNFMPFGGGPRLCTGSELAKLEMAIFIHHLVLNYQWELVGSDQAFAYPFVDFPKGLPIRVRHRTLM* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3345127 3350392 + CsaV3_4G005090.1 Csa04g00509 526119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00509 487 Pfam Cytochrome P450 36 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00509 487 PANTHER CYTOCHROME P450 26 15 461 - -
Csa04g00509 487 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00509 487 PRINTS E-class P450 group I signature 275 292 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00509 487 PRINTS E-class P450 group I signature 343 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00509 487 PRINTS E-class P450 group I signature 383 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00509 487 PRINTS E-class P450 group I signature 424 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00509 487 PRINTS E-class P450 group I signature 434 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00509 487 PANTHER CYTOCHROME P450 90B1 15 461 - -
Csa04g00509 487 Gene3D Cytochrome P450 24 482 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00509 487 SUPERFAMILY Cytochrome P450 31 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00509 487 PRINTS P450 superfamily signature 286 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00509 487 PRINTS P450 superfamily signature 344 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00509 487 PRINTS P450 superfamily signature 425 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00509 487 PRINTS P450 superfamily signature 434 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00509 Csa-Chr4:3345127 Csa05g01875 Csa-Chr5:21981719 2.71E-128 dispersed
Csa06g02415 Csa-Chr6:21570911 Csa04g00509 Csa-Chr4:3345127 4.38E-72 dispersed
Csa04g00509 Csa-Chr4:3345127 Csa07g02396 Csa-Chr7:22043310 5.00E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00509 K09587 - csv:101211854 962.6