Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00510 ATGGCTGTCGAGGAGAAACCAAGAGCCGATAATTCCGCAGAGTCACCGACTTCGGTTCTTGAAGATGAGGATTTATGTAATGGGGAAAAGGAGATCAAGTTGGAGGAAGAAATCATTTTGGAAGCAAAAAATGGGGATTCCAGTCTTATATCAAAAGAAATGGCTGAGGAGGAACAGAAATTGCTGGAAGCTCGGGTCAAGGAAGAGGAAGCAAAAAGACTTGAGGATTCAACAGAATCTGAAAAGTTGAGCGACAATCAGTTTACCAAATTGGATGAACTTCTCACTCAAACACAGTTATACTCAGAATTTTTGTTGGAGAAAATGGATGACATCACATTTAGTGAAATGGAGGAAGACAAGAAATCTGTTGAGAAGAGTAGTGGGCGTGGTTCAAAGAGGAAAGCTGCTGCTCGTTATAACAATAAGAAGGCAAAAAGGGCTGTTGCAGCTATGCTGACTAGATCAAAGGAAGGTGAGCAGGATGAAGATGTAAACTTGACTGGGGAAGAAAGAATTGAAAAGGAGCAGAGTGAACTTGTACCTCTATTGACGGGTGGCAAATTGAAGTCCTACCAACTCAAAGGTGTCAAATGGTTGATTTCATTATGGCAGAATGGGCTGAATGGAATCCTTGCAGATCAAATGGGTCTTGGTAAGACAATTCAAACCATTGGCTTCCTTGCACATTTGAAGGGGAAGGGACTGGATGGACCTTACTTAGTAATTGCTCCTCTTTCCACACTTTCAAATTGGATAAATGAAATATCGAGATTTGTGCCTACCGTGAATGCTATTATTTATCATGGTGACAAAAAACAAAGGGATGAGATTCGTAGAAAGTCTATGCCTAGAAAGATTGGACCTAAATTCCCCATAGTGGTTACTTCTTATGAGATTGCAATGAGTGATGCTAGAAAAGTTTTGAGGCATTACAATTGGAAATATCTTGTTGTTGACGAGGGGCATAGGCTTAAAAACTCAAAATGCAAATTGCTGAAGGAGTTGAAGTACATAACTGTTGAAAATAAACTGCTTCTAACAGGGACACCGCTGCAAAATAATTTGGCAGAGCTTTGGTCATTGTTGAACTTTATTTTACCAGATGTTTTTTCTTCAAGTGAAGAATTTGAGTCATGGTTTGATCTCTCTGGAAAGTCCCATGCTGAAGAAAAAGAAGAAACACAAGAGAACAGAAAGGCCCAGGTGGTAGCAAAACTGCATGGAATACTGAGACCATTTCTACTTCGGAGAATGAAATCTGACGTTGAGCTGATGCTTCCTCGGAAGAAAGAAATTATAATGTATGCAAACATGACTGAATATCAGAAGAACTTTCAGGAACATTTAGTTAACAAGACATTGGAAAATCATCTCTGTGAGAAGGGATCAGGACGTGGTTTTAAAGGAAAGCTTAATAATTTGATGGTTCAGCTTCGGAAAAATTGCAACCATCCTGATCTCTTGGAATCAGTCTTTGATGATTCTTATGCGTACCCTCCTGTAGAGCAGCTAGTTGAGCAGTGTGGCAAATTTCGCTTACTAGATAGATTGTTGACACGGCTATTTGAACGCAAGCATAAAGTCCTTATCTTCTCGCAATGGACTAAGATTTTGGATATCATGGATTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATAGATGGTAGCGTGAAACTTGATGAAAGAAAAAGACAGATCCAGGAGTTCAATGATGTTAACAGCAACTACAGAATATTTATTCTAAGCACCCGGGCTGGTGGTCTGGGTATCAACCTTACTGCAGCAGATACTTGTATACTCTATGATAGCGATTGGAACCCACAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATAGGTCAATCAAAACCTGTACACGTTTACAGACTTGCAACAGCTCAATCTATAGAGGGCCGTATTCTGAAAAGGGCCTTTAGTAAATTGAAGCTTGAGCACGTGGTCATCGAGAAAGGCCAATTCCACCAGGAACGAACAAAACCCACCGCTGCAGATATTGTAGAGGAAGAGGATATACTAGCACTACTAAGGGAGGAAGATTCTGCTGAAGACAAGATGATACAGACAGAGATTAGCGACGCTGATTTGGAACGTATCTTAGACCGCTCCGATCTGATTGTCCCAACTGGTTCAGACAATGAGAAATCTAAAGTTTCTGGCAATTTATACCCTCTCAAAGGGCCTGGATGGGAGGTGGTGATACCAGCTTCAACAGGAGGGGTACTCTCTACACTTAACTCTTAA 2274 40.72 MAVEEKPRADNSAESPTSVLEDEDLCNGEKEIKLEEEIILEAKNGDSSLISKEMAEEEQKLLEARVKEEEAKRLEDSTESEKLSDNQFTKLDELLTQTQLYSEFLLEKMDDITFSEMEEDKKSVEKSSGRGSKRKAAARYNNKKAKRAVAAMLTRSKEGEQDEDVNLTGEERIEKEQSELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWINEISRFVPTVNAIIYHGDKKQRDEIRRKSMPRKIGPKFPIVVTSYEIAMSDARKVLRHYNWKYLVVDEGHRLKNSKCKLLKELKYITVENKLLLTGTPLQNNLAELWSLLNFILPDVFSSSEEFESWFDLSGKSHAEEKEETQENRKAQVVAKLHGILRPFLLRRMKSDVELMLPRKKEIIMYANMTEYQKNFQEHLVNKTLENHLCEKGSGRGFKGKLNNLMVQLRKNCNHPDLLESVFDDSYAYPPVEQLVEQCGKFRLLDRLLTRLFERKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGSVKLDERKRQIQEFNDVNSNYRIFILSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQSKPVHVYRLATAQSIEGRILKRAFSKLKLEHVVIEKGQFHQERTKPTAADIVEEEDILALLREEDSAEDKMIQTEISDADLERILDRSDLIVPTGSDNEKSKVSGNLYPLKGPGWEVVIPASTGGVLSTLNS* 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3357095 3364226 - CsaV3_4G005100.1 Csa04g00510 526120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00510 757 Pfam Helicase conserved C-terminal domain 513 624 IPR001650 -
Csa04g00510 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 514 670 IPR001650 -
Csa04g00510 757 Coils Coil 52 74 - -
Csa04g00510 757 Gene3D - 190 419 IPR038718 -
Csa04g00510 757 PANTHER SNF2/RAD54 HELICASE FAMILY 12 756 - -
Csa04g00510 757 CDD SF2_C_SNF 500 634 - -
Csa04g00510 757 MobiDBLite consensus disorder prediction 117 132 - -
Csa04g00510 757 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 12 756 - -
Csa04g00510 757 Gene3D - 424 724 IPR027417 -
Csa04g00510 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 418 IPR027417 -
Csa04g00510 757 SMART helicmild6 540 624 IPR001650 -
Csa04g00510 757 Pfam SNF2-related domain 192 488 IPR000330 GO:0005524|GO:0140658
Csa04g00510 757 MobiDBLite consensus disorder prediction 1 26 - -
Csa04g00510 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 369 IPR014001 -
Csa04g00510 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 710 IPR027417 -
Csa04g00510 757 MobiDBLite consensus disorder prediction 117 138 - -
Csa04g00510 757 SMART ultradead3 185 380 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00510 K19001 HELLS, DDM1; ATP-dependent DNA helicase - csv:101214753 1458.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00510 Csa-Chr4:3357095 Csa06g01540 Csa-Chr6:12898315 2.68E-148 dispersed
Csa04g01726 Csa-Chr4:16687084 Csa04g00510 Csa-Chr4:3357095 7.05E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31493 PF00176 SNF2_N 2.90E-64 CL0023 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00510 Csa_Chr04 FPKM 40.770115 43.661552 32.970188 30.376673 50.744602 76.802887 49.138206 45.498161 46.732433 40.668709