Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00511 ATGAGTTCAAGTGATGATGAGAGTGCTTCAGGGCCGGACTCTCAATCTTCACCTGCCGCTCCATCGCCGGATTCTTCGTCTTCGTCTTCACCTGATCCACCCTCATCGTCGCCGCCCTCACCGCCATCGCCATCTCCACCATCTCCCGATGCCAATTCCGATACCTCTCCTCCACCATCTCCAGAAAACGATGATTCCTCACCACCACCACCCACATCAGATAATTCTCCATCTCCAAAGTCCCCATCCGATGGTTCTTCCGATGATCACAAATCCCATCCAGCTCCAAAAGAGGGTGGTAGCAGTCCACTGACGTCACCCGCTGCTCATTCTCCTCCATCCCGATCTTCGTCAGCGGGGGACGAATTTTCTCCACCAGCTCTGCCGGAAGGAAAGGCATCACCAAGATCGCCAGCTAAACAACAAGGAACACCGTCCTCTGAGAAGGATTCATCGCCATCGGAAATCAACCCGGGGATTATAATTGGAGTGGCAGTGGGAGTGGGGGTTTTCATAATTGTTCTCATATCAGTAATTGCAGTTTGTTCAAAGAAGAAGAAGAGAAAGAGAGATCCTATGCCATATTATGGAGATCATGGTCATGGAGGACCTAAAGGTGGTGACTATTACAACAGTTCACTACAGCAACAACAAAACTGGCACAACGGCATGCACGGTCCCGGGACGGATCAATTTGGGAGGCCACCAGTATCGGGGTCTCCGGCCGGGACTGGGTGGCCAATGAGCGGCGAGAACATGACGACAGGTAGCTCCTATGCAGGGCCTCCTCTTCCTCCACCATCACCATCGATTGCTTTTGGGTTCAACAAGAGCACGTTCACGTACGACGAACTCGCTGCAGCAACAGGTGGGTTTGCTCATGGAAACCTACTCGGGCAGGGTGGGTTCGGTTATGTGCACAAGGGGGTACTGCCCAATGGGAAGGAAGTGGCAGTGAAAAGCTTGAAGGTGGGCAGTGGGCAGGGTGAGAGGGAGTTCATGGCTGAAGTTGAGATTATTAGTAGAGTCCATCATCGGCATTTGGTGTCTTTGGTTGGGTTTTGCATTGCTGGTGGACAAAGAATGTTGGTCTATGAGTTCGTTCCTAACAATACAATGGAGCATCATCTTCATGCCAAAGGTCTTCCAGTAATGGATTGGCCCGCTAGACTTCGCATTGCCATAGGTTCTGCCAAGGGACTTGCTTATCTTCACGAAGATTGTCATCCAAAGATTATTCATCGAGATATCAAGTCAGCTAATATTCTGATCGATGCCAATTTTGAAGCTATGGTGGCTGATTTTGGATTGGCTAAGTTGTCTACGGATAATCACACACACGTCTCAACTAGAGTCATGGGTACATTCGGGTATTTGGCACCAGAATACGCATCAAGCGGAAAGCTAACAGAAAAGTCTGACGTGTTCTCATTTGGTGTAATGTTGTTGGAACTCATTACAGGAAAACGTCCTGTAGATCCTACACATACGATGGAGGATAGCTTAGTTGATTGGGCTCGACCACTAATGACTCGAGCATTAATGGAAGGGATATACGACGAGTTGGTGGATATACGTTTGGAGAGAGAGTTCAACACACAAGAAATGGCTCGAATGGTGGCTTGTGCTGCAGCCTCCATACGCCACTCGGCTAGAAAACGCCCAAAAATGAGCCAAGTGGTTCGAGCTTTAGAAGGAGATGTCTCACTGGACGACTTAAACGAAGGCACGAGACCAGGCCAAAGCTCCATCTTTAGCGCCACTAGCTCCGACTACGATTCTAGCGCCTACCATGCTGACATGTCGAAATTTAGGAAGATCGCTTTGTCCGACGACAGCAGTGAACTTGCAACTTCAAGCAACGATTCCCGAGAAATGAACCATCCCGGCCCCGGGACCCAAAGGCCGCTCTTTTAA 1917 49.66 MSSSDDESASGPDSQSSPAAPSPDSSSSSSPDPPSSSPPSPPSPSPPSPDANSDTSPPPSPENDDSSPPPPTSDNSPSPKSPSDGSSDDHKSHPAPKEGGSSPLTSPAAHSPPSRSSSAGDEFSPPALPEGKASPRSPAKQQGTPSSEKDSSPSEINPGIIIGVAVGVGVFIIVLISVIAVCSKKKKRKRDPMPYYGDHGHGGPKGGDYYNSSLQQQQNWHNGMHGPGTDQFGRPPVSGSPAGTGWPMSGENMTTGSSYAGPPLPPPSPSIAFGFNKSTFTYDELAAATGGFAHGNLLGQGGFGYVHKGVLPNGKEVAVKSLKVGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNNTMEHHLHAKGLPVMDWPARLRIAIGSAKGLAYLHEDCHPKIIHRDIKSANILIDANFEAMVADFGLAKLSTDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTHTMEDSLVDWARPLMTRALMEGIYDELVDIRLEREFNTQEMARMVACAAASIRHSARKRPKMSQVVRALEGDVSLDDLNEGTRPGQSSIFSATSSDYDSSAYHADMSKFRKIALSDDSSELATSSNDSREMNHPGPGTQRPLF* 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3365923 3370773 - CsaV3_4G005110.1 Csa04g00511 526121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00511 638 Gene3D Phosphorylase Kinase; domain 1 268 367 - -
Csa04g00511 638 MobiDBLite consensus disorder prediction 137 154 - -
Csa04g00511 638 CDD STKc_IRAK 298 566 - -
Csa04g00511 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Csa04g00511 638 MobiDBLite consensus disorder prediction 612 628 - -
Csa04g00511 638 SMART serkin_6 292 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00511 638 MobiDBLite consensus disorder prediction 612 638 - -
Csa04g00511 638 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Csa04g00511 638 MobiDBLite consensus disorder prediction 221 258 - -
Csa04g00511 638 MobiDBLite consensus disorder prediction 32 77 - -
Csa04g00511 638 ProSiteProfiles Protein kinase domain profile. 292 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00511 638 MobiDBLite consensus disorder prediction 187 209 - -
Csa04g00511 638 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 26 616 - -
Csa04g00511 638 SUPERFAMILY Protein kinase-like (PK-like) 266 564 IPR011009 -
Csa04g00511 638 MobiDBLite consensus disorder prediction 1 156 - -
Csa04g00511 638 Pfam Protein tyrosine and serine/threonine kinase 295 563 IPR001245 GO:0004672|GO:0006468
Csa04g00511 638 MobiDBLite consensus disorder prediction 104 121 - -
Csa04g00511 638 MobiDBLite consensus disorder prediction 1 31 - -
Csa04g00511 638 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 26 616 - -
Csa04g00511 638 Gene3D Transferase(Phosphotransferase) domain 1 368 576 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00125 Csa-Chr2:866565 Csa04g00511 Csa-Chr4:3365923 0 dispersed
Csa02g01248 Csa-Chr2:12215725 Csa04g00511 Csa-Chr4:3365923 0 dispersed
Csa04g00511 Csa-Chr4:3365923 Csa05g02336 Csa-Chr5:25732365 2.21E-162 dispersed
Csa04g00511 Csa-Chr4:3365923 Csa05g03083 Csa-Chr5:30852236 4.32E-142 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78119 PF07714 PK_Tyr_Ser-Thr 4.60E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00511 - - csv:101214995 1043.49