Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g00511 | ATGAGTTCAAGTGATGATGAGAGTGCTTCAGGGCCGGACTCTCAATCTTCACCTGCCGCTCCATCGCCGGATTCTTCGTCTTCGTCTTCACCTGATCCACCCTCATCGTCGCCGCCCTCACCGCCATCGCCATCTCCACCATCTCCCGATGCCAATTCCGATACCTCTCCTCCACCATCTCCAGAAAACGATGATTCCTCACCACCACCACCCACATCAGATAATTCTCCATCTCCAAAGTCCCCATCCGATGGTTCTTCCGATGATCACAAATCCCATCCAGCTCCAAAAGAGGGTGGTAGCAGTCCACTGACGTCACCCGCTGCTCATTCTCCTCCATCCCGATCTTCGTCAGCGGGGGACGAATTTTCTCCACCAGCTCTGCCGGAAGGAAAGGCATCACCAAGATCGCCAGCTAAACAACAAGGAACACCGTCCTCTGAGAAGGATTCATCGCCATCGGAAATCAACCCGGGGATTATAATTGGAGTGGCAGTGGGAGTGGGGGTTTTCATAATTGTTCTCATATCAGTAATTGCAGTTTGTTCAAAGAAGAAGAAGAGAAAGAGAGATCCTATGCCATATTATGGAGATCATGGTCATGGAGGACCTAAAGGTGGTGACTATTACAACAGTTCACTACAGCAACAACAAAACTGGCACAACGGCATGCACGGTCCCGGGACGGATCAATTTGGGAGGCCACCAGTATCGGGGTCTCCGGCCGGGACTGGGTGGCCAATGAGCGGCGAGAACATGACGACAGGTAGCTCCTATGCAGGGCCTCCTCTTCCTCCACCATCACCATCGATTGCTTTTGGGTTCAACAAGAGCACGTTCACGTACGACGAACTCGCTGCAGCAACAGGTGGGTTTGCTCATGGAAACCTACTCGGGCAGGGTGGGTTCGGTTATGTGCACAAGGGGGTACTGCCCAATGGGAAGGAAGTGGCAGTGAAAAGCTTGAAGGTGGGCAGTGGGCAGGGTGAGAGGGAGTTCATGGCTGAAGTTGAGATTATTAGTAGAGTCCATCATCGGCATTTGGTGTCTTTGGTTGGGTTTTGCATTGCTGGTGGACAAAGAATGTTGGTCTATGAGTTCGTTCCTAACAATACAATGGAGCATCATCTTCATGCCAAAGGTCTTCCAGTAATGGATTGGCCCGCTAGACTTCGCATTGCCATAGGTTCTGCCAAGGGACTTGCTTATCTTCACGAAGATTGTCATCCAAAGATTATTCATCGAGATATCAAGTCAGCTAATATTCTGATCGATGCCAATTTTGAAGCTATGGTGGCTGATTTTGGATTGGCTAAGTTGTCTACGGATAATCACACACACGTCTCAACTAGAGTCATGGGTACATTCGGGTATTTGGCACCAGAATACGCATCAAGCGGAAAGCTAACAGAAAAGTCTGACGTGTTCTCATTTGGTGTAATGTTGTTGGAACTCATTACAGGAAAACGTCCTGTAGATCCTACACATACGATGGAGGATAGCTTAGTTGATTGGGCTCGACCACTAATGACTCGAGCATTAATGGAAGGGATATACGACGAGTTGGTGGATATACGTTTGGAGAGAGAGTTCAACACACAAGAAATGGCTCGAATGGTGGCTTGTGCTGCAGCCTCCATACGCCACTCGGCTAGAAAACGCCCAAAAATGAGCCAAGTGGTTCGAGCTTTAGAAGGAGATGTCTCACTGGACGACTTAAACGAAGGCACGAGACCAGGCCAAAGCTCCATCTTTAGCGCCACTAGCTCCGACTACGATTCTAGCGCCTACCATGCTGACATGTCGAAATTTAGGAAGATCGCTTTGTCCGACGACAGCAGTGAACTTGCAACTTCAAGCAACGATTCCCGAGAAATGAACCATCCCGGCCCCGGGACCCAAAGGCCGCTCTTTTAA | 1917 | 49.66 | MSSSDDESASGPDSQSSPAAPSPDSSSSSSPDPPSSSPPSPPSPSPPSPDANSDTSPPPSPENDDSSPPPPTSDNSPSPKSPSDGSSDDHKSHPAPKEGGSSPLTSPAAHSPPSRSSSAGDEFSPPALPEGKASPRSPAKQQGTPSSEKDSSPSEINPGIIIGVAVGVGVFIIVLISVIAVCSKKKKRKRDPMPYYGDHGHGGPKGGDYYNSSLQQQQNWHNGMHGPGTDQFGRPPVSGSPAGTGWPMSGENMTTGSSYAGPPLPPPSPSIAFGFNKSTFTYDELAAATGGFAHGNLLGQGGFGYVHKGVLPNGKEVAVKSLKVGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNNTMEHHLHAKGLPVMDWPARLRIAIGSAKGLAYLHEDCHPKIIHRDIKSANILIDANFEAMVADFGLAKLSTDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTHTMEDSLVDWARPLMTRALMEGIYDELVDIRLEREFNTQEMARMVACAAASIRHSARKRPKMSQVVRALEGDVSLDDLNEGTRPGQSSIFSATSSDYDSSAYHADMSKFRKIALSDDSSELATSSNDSREMNHPGPGTQRPLF* | 639 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3365923 | 3370773 | - | CsaV3_4G005110.1 | Csa04g00511 | 526121 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g00511 | 638 | Gene3D | Phosphorylase Kinase; domain 1 | 268 | 367 | - | - | |
Csa04g00511 | 638 | MobiDBLite | consensus disorder prediction | 137 | 154 | - | - | |
Csa04g00511 | 638 | CDD | STKc_IRAK | 298 | 566 | - | - | |
Csa04g00511 | 638 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 412 | 424 | IPR008271 | GO:0004672|GO:0006468 | |
Csa04g00511 | 638 | MobiDBLite | consensus disorder prediction | 612 | 628 | - | - | |
Csa04g00511 | 638 | SMART | serkin_6 | 292 | 553 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g00511 | 638 | MobiDBLite | consensus disorder prediction | 612 | 638 | - | - | |
Csa04g00511 | 638 | ProSitePatterns | Protein kinases ATP-binding region signature. | 298 | 320 | IPR017441 | GO:0005524 | |
Csa04g00511 | 638 | MobiDBLite | consensus disorder prediction | 221 | 258 | - | - | |
Csa04g00511 | 638 | MobiDBLite | consensus disorder prediction | 32 | 77 | - | - | |
Csa04g00511 | 638 | ProSiteProfiles | Protein kinase domain profile. | 292 | 570 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g00511 | 638 | MobiDBLite | consensus disorder prediction | 187 | 209 | - | - | |
Csa04g00511 | 638 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 26 | 616 | - | - | |
Csa04g00511 | 638 | SUPERFAMILY | Protein kinase-like (PK-like) | 266 | 564 | IPR011009 | - | |
Csa04g00511 | 638 | MobiDBLite | consensus disorder prediction | 1 | 156 | - | - | |
Csa04g00511 | 638 | Pfam | Protein tyrosine and serine/threonine kinase | 295 | 563 | IPR001245 | GO:0004672|GO:0006468 | |
Csa04g00511 | 638 | MobiDBLite | consensus disorder prediction | 104 | 121 | - | - | |
Csa04g00511 | 638 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Csa04g00511 | 638 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 26 | 616 | - | - | |
Csa04g00511 | 638 | Gene3D | Transferase(Phosphotransferase) domain 1 | 368 | 576 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00125 | Csa-Chr2:866565 | Csa04g00511 | Csa-Chr4:3365923 | 0 | dispersed | |
Csa02g01248 | Csa-Chr2:12215725 | Csa04g00511 | Csa-Chr4:3365923 | 0 | dispersed | |
Csa04g00511 | Csa-Chr4:3365923 | Csa05g02336 | Csa-Chr5:25732365 | 2.21E-162 | dispersed | |
Csa04g00511 | Csa-Chr4:3365923 | Csa05g03083 | Csa-Chr5:30852236 | 4.32E-142 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78119 | PF07714 | PK_Tyr_Ser-Thr | 4.60E-46 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g00511 | - | - | csv:101214995 | 1043.49 |