Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00512 ATGTCTCTTTTATGTAAAAATTATAATTTGACCTATATATTTAGCTTCTGCGTTCATGTGAGAATCGATGAAGACGCCAAAAAATTGAAGAAAATGGGAAAAGACATTTTCTATGTTCCAGTTTCTGTTTGGACTTTAGAGATAGAGAAAATGAAGATTGATCTTGAAGAAGCAATAGCAAAGCATGTTCTTCGCTTCCTCCCAGCAAAATCATTGATCAGATTCAAATCGGTTTCTAAAAACTGGTACAATTGGATAAATTCCCCTTTCTTCACCCACCAACAAGCCACTCATTTCACTAAAACCTCCGCCTTCATCTCTCAGGCCTACCACCGTTTCTGCCCTTTCTTCATCCCTCTCCACCGTCATTCCCACGGCGTCCCTTCCTCTGCCTTCCTCCCTTTCCTCCCTCAAATGTCCACCATCAGAACCACTTCCCACGGCCTCCTCTGCTGCAAAAGTACTTTCCAAGACAATACTTATTTCATCGCTAACCCCACCACTGAACGATGGATTGAACTCCCTGAACCTACTCTGTTTCACTCCTCTGTTTCTGCCCTGTCTCTTGCTTTCACCCCTTCCACTTACAATTTCTACTCCCATTTCCAACTCGTCTGTGCTGTCCCCATTCCTTCTGTTCGTGCTGTTTTCTTTGAAATTTACTCTTCTAGGACTAATTCTTGGAGGCTTTCTGATTCCCAATACTTTTATGATGCTGATCACGATTTGAGCTTTAGAGGTGATGGGTTTTTTATGGATGGATTTGTGTACTGGGAGACGTCAAATGGCGTCATTCTCGCGTTCGATTTGACAAATGAAGAATATGGAGAGATTTTGCTCCCTCTCGATCTCCCTTCTCCTCACTATGGAGCTTTAATGGAGATGAATGGAGAGTTGTGTTACGTTACGGTAATTACGAAGAACCACGATGATGGTCATGATAATGGCGATGACGATGATTGTTATTATTGGTTAGGGGTGTATGGTGGTGGTGGCCATGGGATGGTGTTGAAGAAAAGAATTCCACTTTATGATGATAATGGGTTTTTTTTTGAGGGAGATGTTAGAGTTTTGTCTGGTTTAAGTGAAGGTGCAGTGATGATTCTTGTGGGAAGCAAAGTGATTCTTTATCATGTGGAAGAAAGGAAGAGGAGGTTTGTTGGAATAGTCGAACCGGCAGAGATTGCGGCGATTGATGTCGATGATGGTGCCGTGCGGTTTTTGCCATATGTTAATAGTCTTGCGAGCGTGTGTCCGGTGGACGAAATGCCGCCGGAGGATTACGAGTTTGATAAGATCTTGAAAAAAAAGAGCAGAAACAAGATTACTTGA 1332 42.57 MSLLCKNYNLTYIFSFCVHVRIDEDAKKLKKMGKDIFYVPVSVWTLEIEKMKIDLEEAIAKHVLRFLPAKSLIRFKSVSKNWYNWINSPFFTHQQATHFTKTSAFISQAYHRFCPFFIPLHRHSHGVPSSAFLPFLPQMSTIRTTSHGLLCCKSTFQDNTYFIANPTTERWIELPEPTLFHSSVSALSLAFTPSTYNFYSHFQLVCAVPIPSVRAVFFEIYSSRTNSWRLSDSQYFYDADHDLSFRGDGFFMDGFVYWETSNGVILAFDLTNEEYGEILLPLDLPSPHYGALMEMNGELCYVTVITKNHDDGHDNGDDDDCYYWLGVYGGGGHGMVLKKRIPLYDDNGFFFEGDVRVLSGLSEGAVMILVGSKVILYHVEERKRRFVGIVEPAEIAAIDVDDGAVRFLPYVNSLASVCPVDEMPPEDYEFDKILKKKSRNKIT* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3372076 3374115 - CsaV3_4G005120.1 Csa04g00512 526122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00512 443 SUPERFAMILY F-box domain 59 122 IPR036047 GO:0005515
Csa04g00512 443 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN-RELATED 48 417 - -
Csa04g00512 443 TIGRFAM F_box_assoc_1: F-box protein interaction domain 147 303 IPR017451 -
Csa04g00512 443 Gene3D - 49 91 - -
Csa04g00512 443 PANTHER F-BOX DOMAIN-CONTAINING PROTEIN-RELATED 48 417 - -
Csa04g00512 443 Pfam F-box domain 58 89 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00512 - - - csv:105435180 779.245
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01877 Csa-Chr1:15781792 Csa04g00512 Csa-Chr4:3372076 3.57E-18 dispersed
Csa03g02624 Csa-Chr3:24776499 Csa04g00512 Csa-Chr4:3372076 3.30E-09 dispersed
Csa03g03528 Csa-Chr3:31543133 Csa04g00512 Csa-Chr4:3372076 3.71E-07 dispersed
Csa04g00512 Csa-Chr4:3372076 Csa05g00487 Csa-Chr5:3162038 1.07E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g951 . . . . . . . . Cmo04g00835 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1614 Cone9ag1540 . . Chy07g01289 . . . . . . . . . . . . . . . . . . . . . . . . . Cla07g00863 Cam07g0936 Cec07g1002 Cco07g0979 Clacu07g0909 Cmu07g0909 Cre07g1279 Lsi07g00209 Csa04g00512 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013669 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 0 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00512 Csa_Chr04 FPKM 71.197182 72.641907 593.740601 604.660767 21.347349 23.916714 19.586563 1.508624 0.990107 0.718411