Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00514 ATGATGATGACACCAAAACGATTCAAGCTACTCCGAATCCCTTCCTTCCATTGTTGTCGTTCCAACGACATCTCCGTCGTCCCCACTGACCCACCATCGCCACCGCCACCGCCTAAACCCCACCACTCCTCCTTGAGGCGCCACGTGTCCTCCGCCTTCCGAACTGCGGCTTGCGGCTGTAGATCATCCTCCACCAACTCCGACGACGACCAAATTTGCAAATCATCTCCAACTCTCCCAACGCACGTGCCACCTACGCCCCTCCTTCACTCATTCGACGACGGTTCGACTTTCCCGAAGCGACAACGACGCCGGAAAAACAAAAAGAAATCAAAATCCAAATCAACCACACTCACACGCCTCCGAACCAGCACCTCGTCGACGGAGAGCGGTTTATTCAGCAGCGAATCGTTCGATGAAATCGACGAACTAGAAGAAACCGAGACGCTAATTTCATCATCCAAAACAATCTCCACTTCCGACGATGATAACGATTCTTCCTCTGAATTCAATCCTCAATTGGAAACCATACGGGAGAAACCAAACAAAATAAATTTAAGGAGAAAGAAGGAGAAAGAGAAACGACGTCGTAAACAGAAGAGGACAACGATCATCTCGCCATCGCCGGAAATCGAGTCGCCGGCGAGGCTTTCGGTGTTCCAGAGGCTGATTCCGTGCACGGTGGAGGGGAAAATCAGGGAGAGTTTTGCGGTGGTGAAGAAATCTGCAGATCCGTTTGAGGATTTCAAAAGGTCGATGATGGAGATGATAATGGAGAAGGAGATGTTCGAGGAGAAGGATTTGGAGCAGCTTCTTCATTGTTTGTTGTCGTTGAATGATAGGGAACACCATGGGATTATTGTTGAAGCTTTCTCTGAGATTTGGCAGTCTCTGTTCTGTAACTGA 906 49.23 MMMTPKRFKLLRIPSFHCCRSNDISVVPTDPPSPPPPPKPHHSSLRRHVSSAFRTAACGCRSSSTNSDDDQICKSSPTLPTHVPPTPLLHSFDDGSTFPKRQRRRKNKKKSKSKSTTLTRLRTSTSSTESGLFSSESFDEIDELEETETLISSSKTISTSDDDNDSSSEFNPQLETIREKPNKINLRRKKEKEKRRRKQKRTTIISPSPEIESPARLSVFQRLIPCTVEGKIRESFAVVKKSADPFEDFKRSMMEMIMEKEMFEEKDLEQLLHCLLSLNDREHHGIIVEAFSEIWQSLFCN* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3382292 3383742 + CsaV3_4G005140.1 Csa04g00514 526124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00514 301 MobiDBLite consensus disorder prediction 187 202 - -
Csa04g00514 301 Pfam Transcriptional repressor, ovate 242 299 IPR006458 -
Csa04g00514 301 MobiDBLite consensus disorder prediction 60 203 - -
Csa04g00514 301 MobiDBLite consensus disorder prediction 117 135 - -
Csa04g00514 301 MobiDBLite consensus disorder prediction 150 175 - -
Csa04g00514 301 PANTHER TRANSCRIPTION REPRESSOR OFP7 7 300 - -
Csa04g00514 301 ProSiteProfiles OVATE domain profile. 238 297 IPR006458 -
Csa04g00514 301 MobiDBLite consensus disorder prediction 24 48 - -
Csa04g00514 301 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 236 299 IPR006458 -
Csa04g00514 301 MobiDBLite consensus disorder prediction 101 116 - -
Csa04g00514 301 MobiDBLite consensus disorder prediction 60 79 - -
Csa04g00514 301 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 7 300 IPR038933 GO:0045892
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00514 - - - csv:101212095 418.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00514 Csa-Chr4:3382292 Csa06g03725 Csa-Chr6:29764099 4.92E-15 dispersed
Csa04g00514 Csa-Chr4:3382292 Csa06g02710 Csa-Chr6:23763554 3.52E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g945 Blo04g00923 Blo16g00038 . . . . . . Cmo04g00834 . . . . . . . . . . . . . . . . . . . . . . Cone8ag0800 Cone12ag0753 . . . . Chy07g01287 . . . . . . . Bma03g00994 . . . . . . . . . . . . . . . . . Cla07g00862 Cam07g0934 Cec07g0999 Cco07g0977 Clacu07g0908 Cmu07g0908 Cre07g1276 Lsi07g00211 Csa04g00514 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011669 1 0 2 1 0 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 0 2 1 1 1 1 1 1 2 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31494 PF04844 Ovate 6.60E-24 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00514 Csa_Chr04 FPKM 33.878445 40.09824 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0