Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00518 ATGGACCTGGACGGCCTAGACGAAGGGAGCCAGGTACCATCACGGACCTCCAGATTCGCACCCAAGTCCTCTAAATTCAAGCCGAAACCAAAATCGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCTAACGAAGTTGGAACCTCAACCTCCCATTTCTAAGCCGGAAGTTGTAGAGCCTGATGCTCGAGTTGAGGAGAAGAAGGAAGACGGTGAAGAAGTAGAAGTAAAACCTAAAGTTGAATCCTCACTTCCTAATGGAGTTGCTAAAATGGACGTTGAAACTAAGTCGGAAGTTGAAGAGGATGCAATGGTGGATGATGATCCAATTGAAGAGGATGCTTCTGAAGATATGGTTGTTCGTGAAATCGACGTTCTATTTACTCCTTCAGTTGATAGCAATTCGAAATTATATGTGTTGCAATATCCTCTTAGACCACGCTGGAGGCCCTATGAATTCGAGGGGCGATGTGACGAGGTAAGAGTTAAACCTAGCACTGGAGAAGTGGAAGTCGACCTGAATGTTGATATTGAATCCAATAACTATGACAACAAAGCTGATGGCACATTCCAAATGAAGAAGCAGACTTTGACATCTTCATGGCAACCGCCTCTAGCTACGTCCTATGCTGTTGGTCTGCTTATGGGCAATAAGCTACACCTGAATCCCGTACATGCAGTTGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCGAAAAGGAAAAATAATGTTAGAGCTGATTCAGATGTTAAGTCAGAAGAGCATGTGGATGTTAATTCTGCAGGTGCATCAAGGAAGCAGAAGAAGCAAACAGGACCTTCAACGGAAGTTAAAACTAGAGATGAGGAGTGCTGGATTCCACTCAAGTACTATGGCTTAGAGAGTGATCTATCAACCAGACATCTGCAAAGCATGGTGTCACAAACAGTTTCCCCTATGCAATTTTCAATGAGTCCGCACGACTATATGGACTCCTTGTGTCCTGGTACGAGTACAAGCGGCAACAAGCCCAAAGGTCCATCTAAAAAGTATTTGCTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACCGAGGGACCTCCGGTTCAAAGATTTAGTGCACTTAAGCATTATGCTCCTGATTATGAAACAGAAGAGTTTATTGAGACTCTTCAGCAATATGCTCAGTTAGTGCAGGGTCTCTGGGTTCCAAAAAGTTTATTTCTAATTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTTTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAGAGTGAAACATTTTTTGAATTTATTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAAATTTAAGGAGAAAACAGACCGTTTATTTTTAAGCAACCACGTCAGAATTGCTGAGAAGCAAGAAGAGCTCTGGAACAACGTGGAAAAAGGGTTCACTTTCCTGAGATCTATAAAAAGTGTTCACCATGCAAATGCCGCCACAGGAAAGCCTGGCGTGGTTCCTAAACTTGAAAAACAAGTCAGTTCTGACCAGACTACAACTAAAAGCAGTAATGCACCTCTTAACCGCAAAGGTGCAATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAAATCATAAGGTTTGCAGCTTTCAGTTGATATGTCAAGGTTTGCGTGACTTGGCTGTGTCCCAGTCTACTCTTCCGAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAAAATCATAAGCCAAGTCGCTACTGAGATTCATGGTCTCTATGTCTTGACCTCATCTCCAGAGCATCCAGAATATGATCCATTGAGGAAAGTTGTCATTCAACTTTTACGTGGACGAGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCAAAGCATGAACTTGGTAGAGCTATCAATAGCAATGAATATAGCAAGGTTATGAATGAAATTTGCATATCCCACGGTTCTTCTTGGACCTTGAAGAGTGGTGATGGAAATTCAAGATGA 2109 43.1 MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVEPDARVEEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDAMVDDDPIEEDASEDMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIESNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNSGGPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSWTLKSGDGNSR* 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3393666 3401233 - CsaV3_4G005180.1 Csa04g00518 526128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00518 702 Pfam RPC5 protein 117 496 IPR006886 GO:0005634|GO:0006351
Csa04g00518 702 MobiDBLite consensus disorder prediction 59 80 - -
Csa04g00518 702 MobiDBLite consensus disorder prediction 522 547 - -
Csa04g00518 702 MobiDBLite consensus disorder prediction 524 543 - -
Csa04g00518 702 MobiDBLite consensus disorder prediction 236 283 - -
Csa04g00518 702 MobiDBLite consensus disorder prediction 42 56 - -
Csa04g00518 702 MobiDBLite consensus disorder prediction 247 267 - -
Csa04g00518 702 MobiDBLite consensus disorder prediction 1 87 - -
Csa04g00518 702 PANTHER DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5 112 490 IPR006886 GO:0005634|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00518 K14721 RPC5, POLR3E; DNA-directed RNA polymerase III subunit RPC5 - csv:101212587 1341.64
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g939 Blo04g00924 . . . Bpe15g00435 . . . . Cmo16g00709 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01282 . . . . . . . Bma03g00995 . . . . Cma16g00652 . . . . Cpe14g00556 . . . . . . . Cla07g00858 Cam07g0930 Cec07g0995 Cco07g0971 Clacu07g0904 Cmu07g0904 Cre07g1272 Lsi07g00215 Csa04g00518 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008265 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 5 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00518 Csa_Chr04 FPKM 25.797901 28.902719 29.768688 30.388042 24.553402 24.288818 19.711966 32.130539 33.848206 31.385708