Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00519 ATGCTAACAGACTTAGAAAATTCAGCCGAAGTCAGTATTGCCTCCACCGTAAATCAACTTCCGCCGACCAAATCTGCCGTGAAAAAAAAGCGTAGTTTACCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCTACAAATCGATTTGTGTGTGAAATTTGCAACAAAGGTTTTCAAAGAGATCAGAATCTTCAACTTCACCGACGAGGTCATAATCTTCCATGGAAACTCCGGCAACGGACAAGCAAAGAGGTGAAAAAGAAAGTCTATGTCTGCCCGGAACCGTCGTGCGTCCACCACCATCCGTCGAGAGCTCTCGGCGATCTGACTGGAATAAAGAAGCACTTCTGCCGGAAGCACGGTGAGAAGAAATGGAAGTGTGAAAAGTGCTCTAAAAAATACGCCGTCAAGTCCGATTGGAAGGCCCATTCTAAGATTTGTGGAACCAGGGAGTACAAGTGCGACTGTGAGACTGTGTTTTCAAGAAGAGATAGTTTCATCACTCACAGAGCGTTCTGTGATGTGTTGACAAAGGAGGTTGCCGGAAGTTTGTCTCCGGCAGCGGCGGAGATTCCTAATTTGGAGTCCGATTCTCAGGTTCAGCGACCGTCGGGTAGTTCGTCTCCGCCGTCTTCTGCTCCTCCTCTTCCCGCCGGTACCGCTCCCGTCTCAGTAGCCCTTCCTCCATCCACTGACACGATGTCGTCAATCGCGTCTATTGAGAATAAAGCCTCACCGGAAAATCCTCCGCCGCTGATTGGAGAGGCACAAGACAGAACTAGCCTAACCGGAAACTCCGGCAGCAGCAACACCACAATTAGCAGCACCAATGCTACCGTATTGGCTAGCTTGTTTGCTTCCTCTGCCGCATCACTGAGCTTACAGCCGCCACAGCCGCCAGCATTTTGCGACTTATTACGAGCCATGGCGCGGCCCGATCGGGCGACTGAAATTGCACCGCCGTTGGTTTTTGAACCTCTTTCTCTGTGCCTATCGACCGACACTGAATCGTCGCTTTTCAGAACCGGAATCCAAGATTGCCGCCCATATGTGCCACCGACGCCGCCAGCCATGTCCGCCACCGGACTCCTACAGAAGGCCGCTCAAATGGGCGCTGCGGCTGCGGGCGCATCAGTGTTTCGTGGACTTGGTTTATCGTCTTCCCCTTCTTCTGCACAACAGGGGAGTTTATAA 1218 51.72 MLTDLENSAEVSIASTVNQLPPTKSAVKKKRSLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDVLTKEVAGSLSPAAAEIPNLESDSQVQRPSGSSSPPSSAPPLPAGTAPVSVALPPSTDTMSSIASIENKASPENPPPLIGEAQDRTSLTGNSGSSNTTISSTNATVLASLFASSAASLSLQPPQPPAFCDLLRAMARPDRATEIAPPLVFEPLSLCLSTDTESSLFRTGIQDCRPYVPPTPPAMSATGLLQKAAQMGAAAAGASVFRGLGLSSSPSSAQQGSL* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3406522 3409924 + CsaV3_4G005190.1 Csa04g00519 526129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00519 405 Gene3D Classic Zinc Finger 37 104 - -
Csa04g00519 405 MobiDBLite consensus disorder prediction 196 279 - -
Csa04g00519 405 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Csa04g00519 405 MobiDBLite consensus disorder prediction 200 215 - -
Csa04g00519 405 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Csa04g00519 405 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 401 - -
Csa04g00519 405 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Csa04g00519 405 SMART c2h2final6 57 79 IPR013087 -
Csa04g00519 405 SMART c2h2final6 133 153 IPR013087 -
Csa04g00519 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Csa04g00519 405 MobiDBLite consensus disorder prediction 234 251 - -
Csa04g00519 405 Gene3D Classic Zinc Finger 126 186 - -
Csa04g00519 405 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02036 Csa-Chr2:18764907 Csa04g00519 Csa-Chr4:3406522 4.18E-116 dispersed
Csa04g00519 Csa-Chr4:3406522 Csa07g01699 Csa-Chr7:17501882 6.96E-108 dispersed
Csa04g00519 Csa-Chr4:3406522 Csa06g03225 Csa-Chr6:27277593 3.02E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31495 PF00096 zf-C2H2 0.0039 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00519 K25869 - csv:101215476 700.279