Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00519 ATGCTAACAGACTTAGAAAATTCAGCCGAAGTCAGTATTGCCTCCACCGTAAATCAACTTCCGCCGACCAAATCTGCCGTGAAAAAAAAGCGTAGTTTACCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCTACAAATCGATTTGTGTGTGAAATTTGCAACAAAGGTTTTCAAAGAGATCAGAATCTTCAACTTCACCGACGAGGTCATAATCTTCCATGGAAACTCCGGCAACGGACAAGCAAAGAGGTGAAAAAGAAAGTCTATGTCTGCCCGGAACCGTCGTGCGTCCACCACCATCCGTCGAGAGCTCTCGGCGATCTGACTGGAATAAAGAAGCACTTCTGCCGGAAGCACGGTGAGAAGAAATGGAAGTGTGAAAAGTGCTCTAAAAAATACGCCGTCAAGTCCGATTGGAAGGCCCATTCTAAGATTTGTGGAACCAGGGAGTACAAGTGCGACTGTGAGACTGTGTTTTCAAGAAGAGATAGTTTCATCACTCACAGAGCGTTCTGTGATGTGTTGACAAAGGAGGTTGCCGGAAGTTTGTCTCCGGCAGCGGCGGAGATTCCTAATTTGGAGTCCGATTCTCAGGTTCAGCGACCGTCGGGTAGTTCGTCTCCGCCGTCTTCTGCTCCTCCTCTTCCCGCCGGTACCGCTCCCGTCTCAGTAGCCCTTCCTCCATCCACTGACACGATGTCGTCAATCGCGTCTATTGAGAATAAAGCCTCACCGGAAAATCCTCCGCCGCTGATTGGAGAGGCACAAGACAGAACTAGCCTAACCGGAAACTCCGGCAGCAGCAACACCACAATTAGCAGCACCAATGCTACCGTATTGGCTAGCTTGTTTGCTTCCTCTGCCGCATCACTGAGCTTACAGCCGCCACAGCCGCCAGCATTTTGCGACTTATTACGAGCCATGGCGCGGCCCGATCGGGCGACTGAAATTGCACCGCCGTTGGTTTTTGAACCTCTTTCTCTGTGCCTATCGACCGACACTGAATCGTCGCTTTTCAGAACCGGAATCCAAGATTGCCGCCCATATGTGCCACCGACGCCGCCAGCCATGTCCGCCACCGGACTCCTACAGAAGGCCGCTCAAATGGGCGCTGCGGCTGCGGGCGCATCAGTGTTTCGTGGACTTGGTTTATCGTCTTCCCCTTCTTCTGCACAACAGGGGAGTTTATAA 1218 51.72 MLTDLENSAEVSIASTVNQLPPTKSAVKKKRSLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDVLTKEVAGSLSPAAAEIPNLESDSQVQRPSGSSSPPSSAPPLPAGTAPVSVALPPSTDTMSSIASIENKASPENPPPLIGEAQDRTSLTGNSGSSNTTISSTNATVLASLFASSAASLSLQPPQPPAFCDLLRAMARPDRATEIAPPLVFEPLSLCLSTDTESSLFRTGIQDCRPYVPPTPPAMSATGLLQKAAQMGAAAAGASVFRGLGLSSSPSSAQQGSL* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3406522 3409924 + CsaV3_4G005190.1 Csa04g00519 526129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00519 405 Gene3D Classic Zinc Finger 37 104 - -
Csa04g00519 405 MobiDBLite consensus disorder prediction 196 279 - -
Csa04g00519 405 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Csa04g00519 405 MobiDBLite consensus disorder prediction 200 215 - -
Csa04g00519 405 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Csa04g00519 405 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 401 - -
Csa04g00519 405 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Csa04g00519 405 SMART c2h2final6 57 79 IPR013087 -
Csa04g00519 405 SMART c2h2final6 133 153 IPR013087 -
Csa04g00519 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Csa04g00519 405 MobiDBLite consensus disorder prediction 234 251 - -
Csa04g00519 405 Gene3D Classic Zinc Finger 126 186 - -
Csa04g00519 405 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 401 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00519 K25869 IDD1_2; zinc finger protein IDD1/2 - csv:101215476 700.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02036 Csa-Chr2:18764907 Csa04g00519 Csa-Chr4:3406522 4.18E-116 dispersed
Csa04g00519 Csa-Chr4:3406522 Csa07g01699 Csa-Chr7:17501882 6.96E-108 dispersed
Csa04g00519 Csa-Chr4:3406522 Csa06g03225 Csa-Chr6:27277593 3.02E-157 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g03048 . 17 737 C2H2 Transcription Factor Family AT5G01310 59.7 3.3e-237 818.1
Csa04g02111 CCT,ECH 97 334 C2H2 Transcription Factor Family AT3G57670 76.8 2.0e-111 399.4
Csa03g03608 CCT,ECH 63 313 C2H2 Transcription Factor Family AT3G57670 71.2 1.1e-101 367.1
Csa04g01407 . 170 331 C2H2 Transcription Factor Family AT3G57670 91.4 1.2e-95 347.1
Csa07g02025 . 112 287 C2H2 Transcription Factor Family AT3G57670 83.2 9.8e-95 344.0
Csa01g01464 . 133 286 C2H2 Transcription Factor Family AT3G57670 83.1 1.6e-84 310.1
Csa05g01484 . 95 251 C2H2 Transcription Factor Family AT3G57670 81.5 6.0e-84 308.1
Csa01g01464 . 16 298 C2H2 Transcription Factor Family AT1G08290 51.6 1.6e-88 323.2
Csa05g01484 . 95 253 C2H2 Transcription Factor Family AT1G08290 78.0 4.9e-82 301.6
Csa07g02025 . 99 278 C2H2 Transcription Factor Family AT1G08290 69.6 1.0e-79 293.9
Csa04g01407 . 174 328 C2H2 Transcription Factor Family AT1G08290 78.8 3.9e-79 292.0
Csa04g02111 CCT,ECH 142 328 C2H2 Transcription Factor Family AT1G08290 65.4 6.7e-79 291.2
Csa03g03608 CCT,ECH 159 313 C2H2 Transcription Factor Family AT1G08290 75.6 7.4e-78 287.7
Csa04g02111 CCT,ECH 53 331 C2H2 Transcription Factor Family AT3G20880 59.1 1.4e-94 343.6
Csa03g03608 CCT,ECH 160 311 C2H2 Transcription Factor Family AT3G20880 88.2 4.6e-90 328.6
Csa04g01407 . 133 331 C2H2 Transcription Factor Family AT3G20880 71.1 1.7e-89 326.6
Csa01g01464 . 75 295 C2H2 Transcription Factor Family AT3G20880 61.8 4.3e-88 322.0
Csa07g02025 . 115 272 C2H2 Transcription Factor Family AT3G20880 83.6 3.1e-86 315.8
Csa05g01484 . 95 248 C2H2 Transcription Factor Family AT3G20880 81.2 1.2e-82 303.9
Csa04g02111 CCT,ECH 53 331 C2H2 Transcription Factor Family AT1G51220 64.7 6.4e-98 354.4
Csa03g03608 CCT,ECH 155 311 C2H2 Transcription Factor Family AT1G51220 88.6 1.5e-91 333.2
Csa04g01407 . 175 352 C2H2 Transcription Factor Family AT1G51220 80.8 5.8e-91 331.3
Csa07g02025 . 115 278 C2H2 Transcription Factor Family AT1G51220 82.9 3.5e-88 322.0
Csa01g01464 . 136 289 C2H2 Transcription Factor Family AT1G51220 83.1 4.8e-85 311.6
Csa05g01484 . 95 248 C2H2 Transcription Factor Family AT1G51220 81.2 4.5e-83 305.1
Csa05g01484 . 25 251 C2H2 Transcription Factor Family AT1G13290 70.0 2.0e-95 345.9
Csa04g02111 CCT,ECH 97 310 C2H2 Transcription Factor Family AT1G13290 68.1 1.1e-83 307.0
Csa03g03608 CCT,ECH 157 313 C2H2 Transcription Factor Family AT1G13290 81.8 9.8e-82 300.4
Csa04g01407 . 165 332 C2H2 Transcription Factor Family AT1G13290 76.7 1.1e-80 297.0
Csa01g01464 . 88 305 C2H2 Transcription Factor Family AT1G13290 61.8 4.1e-80 295.0
Csa07g02025 . 112 267 C2H2 Transcription Factor Family AT1G13290 78.5 3.9e-78 288.5
Csa04g00426 . 1 591 C2H2 Transcription Factor Family AT5G51230 62.5 5.9e-222 767.3
Csa03g00242 . 60 358 C2H2 Transcription Factor Family AT5G51230 54.0 2.4e-74 276.9
Csa03g04394 . 1 396 C2H2 Transcription Factor Family AT2G24500 57.6 4.8e-121 431.4
Csa01g00739 CCT,ECH 27 208 C2H2 Transcription Factor Family AT1G25250 79.8 6.4e-86 314.7
Csa05g01292 . 31 400 C2H2 Transcription Factor Family AT1G25250 54.4 3.2e-85 312.4
Csa01g00488 CCT,ECH 13 210 C2H2 Transcription Factor Family AT1G25250 75.1 2.7e-84 309.3
Csa02g02036 . 1 186 C2H2 Transcription Factor Family AT1G25250 57.1 1.2e-60 230.7
Csa06g03225 . 5 185 C2H2 Transcription Factor Family AT1G25250 58.7 2.1e-60 229.9
Csa06g02557 . 52 225 C2H2 Transcription Factor Family AT1G25250 58.0 3.9e-59 225.7
Csa02g02630 . 17 206 C2H2 Transcription Factor Family AT1G25250 55.4 6.7e-59 224.9
Csa03g03266 . 41 192 C2H2 Transcription Factor Family AT1G25250 63.6 2.5e-58 223.0
Csa04g00519 . 2 183 C2H2 Transcription Factor Family AT1G25250 57.3 2.5e-58 223.0
Csa07g01699 . 50 203 C2H2 Transcription Factor Family AT1G25250 63.7 2.5e-58 223.0
Csa01g01294 . 31 184 C2H2 Transcription Factor Family AT1G25250 62.4 3.3e-58 222.6
Csa01g02773 . 45 228 C2H2 Transcription Factor Family AT1G25250 57.1 3.3e-58 222.6
Csa04g02543 . 63 225 C2H2 Transcription Factor Family AT1G25250 61.4 7.4e-58 221.5
Csa03g04077 . 57 209 C2H2 Transcription Factor Family AT1G25250 64.5 1.3e-57 220.7
Csa07g00313 . 32 187 C2H2 Transcription Factor Family AT1G25250 62.4 1.6e-57 220.3
Csa05g00943 . 52 212 C2H2 Transcription Factor Family AT1G25250 57.9 2.2e-57 219.9
Csa07g02385 . 49 200 C2H2 Transcription Factor Family AT1G25250 63.0 3.1e-56 216.1
Csa07g01808 . 1 139 C2H2 Transcription Factor Family AT1G25250 66.2 1.6e-52 203.8
Csa05g02902 . 6 261 C2H2 Transcription Factor Family AT3G27970 59.6 5.8e-89 324.7
Csa05g02903 . 23 267 C2H2 Transcription Factor Family AT3G27970 62.4 5.0e-85 311.6
Csa03g03048 . 17 737 C2H2 Transcription Factor Family AT5G01310 59.7 3.3e-237 818.1
Csa07g00181 . 65 292 C2H2 Transcription Factor Family AT4G35280 52.3 4.3e-55 211.8
Csa06g03152 . 137 305 C2H2 Transcription Factor Family AT5G22890 58.0 1.6e-57 220.3
Csa01g00739 CCT,ECH 74 186 C2H2 Transcription Factor Family AT1G68130 89.4 1.7e-58 223.4
Csa02g02036 . 79 186 C2H2 Transcription Factor Family AT1G68130 68.2 5.4e-41 165.2
Csa03g03266 . 84 192 C2H2 Transcription Factor Family AT1G68130 61.8 1.5e-38 157.1
Csa02g02630 . 74 181 C2H2 Transcription Factor Family AT1G68130 64.5 3.3e-38 156.0
Csa01g01294 . 77 184 C2H2 Transcription Factor Family AT1G68130 63.6 5.6e-38 155.2
Csa03g04077 . 101 209 C2H2 Transcription Factor Family AT1G68130 62.7 5.6e-38 155.2
Csa04g02543 . 109 225 C2H2 Transcription Factor Family AT1G68130 61.3 5.6e-38 155.2
Csa07g01699 . 96 203 C2H2 Transcription Factor Family AT1G68130 62.7 7.4e-38 154.8
Csa04g00519 . 74 183 C2H2 Transcription Factor Family AT1G68130 63.4 1.3e-37 154.1
Csa05g00943 . 95 212 C2H2 Transcription Factor Family AT1G68130 56.7 2.1e-37 153.3
Csa07g01808 . 36 139 C2H2 Transcription Factor Family AT1G68130 67.9 3.7e-37 152.5
Csa06g03225 . 78 185 C2H2 Transcription Factor Family AT1G68130 62.7 6.2e-37 151.8
Csa07g00313 . 78 189 C2H2 Transcription Factor Family AT1G68130 61.1 6.2e-37 151.8
Csa07g02385 . 92 200 C2H2 Transcription Factor Family AT1G68130 60.0 1.8e-36 150.2
Csa05g01292 . 36 399 C2H2 Transcription Factor Family AT2G01940 52.4 7.4e-86 314.7
Csa01g00488 CCT,ECH 37 441 C2H2 Transcription Factor Family AT2G01940 52.2 4.8e-85 312.0
Csa01g00739 CCT,ECH 31 207 C2H2 Transcription Factor Family AT2G01940 80.3 6.5e-82 301.6
Csa02g02036 . 40 188 C2H2 Transcription Factor Family AT2G01940 66.4 1.1e-57 221.1
Csa03g03266 . 45 194 C2H2 Transcription Factor Family AT2G01940 64.5 4.3e-57 219.2
Csa07g01699 . 57 205 C2H2 Transcription Factor Family AT2G01940 65.1 2.8e-56 216.5
Csa02g02630 . 35 183 C2H2 Transcription Factor Family AT2G01940 66.4 4.7e-56 215.7
Csa06g03225 . 39 187 C2H2 Transcription Factor Family AT2G01940 65.1 1.4e-55 214.2
Csa03g04077 . 62 225 C2H2 Transcription Factor Family AT2G01940 59.6 3.0e-55 213.0
Csa05g00943 . 52 214 C2H2 Transcription Factor Family AT2G01940 59.6 6.8e-55 211.8
Csa07g02385 . 53 202 C2H2 Transcription Factor Family AT2G01940 62.5 8.9e-55 211.5
Csa01g02773 . 52 201 C2H2 Transcription Factor Family AT2G01940 63.2 1.2e-54 211.1
Csa01g01294 . 38 186 C2H2 Transcription Factor Family AT2G01940 61.8 3.4e-54 209.5
Csa04g02543 . 70 218 C2H2 Transcription Factor Family AT2G01940 64.5 3.4e-54 209.5
Csa04g00519 . 35 181 C2H2 Transcription Factor Family AT2G01940 64.7 4.4e-54 209.1
Csa06g02557 . 76 227 C2H2 Transcription Factor Family AT2G01940 62.3 4.4e-54 209.1
Csa07g00313 . 39 189 C2H2 Transcription Factor Family AT2G01940 63.4 7.5e-54 208.4
Csa07g01808 . 1 138 C2H2 Transcription Factor Family AT2G01940 67.9 1.1e-52 204.5
Csa02g02593 . 1 245 C2H2 Transcription Factor Family AT5G14140 65.9 5.9e-91 330.9
Csa07g01956 . 1 825 C2H2 Transcription Factor Family AT3G62240 53.1 3.2e-236 815.1
Csa06g03891 . 1 352 C2H2 Transcription Factor Family AT1G30970 62.5 1.9e-109 392.9
Csa05g02173 . 8 371 C2H2 Transcription Factor Family AT4G06634 59.2 2.0e-63 240.0
Csa03g03379 . 66 240 C2H2 Transcription Factor Family AT4G04885 57.1 3.5e-49 193.7
Csa01g01359 . 806 979 C2H2 Transcription Factor Family AT1G66500 51.4 8.9e-41 164.9
Csa05g01535 . 49 449 C2H2 Transcription Factor Family AT5G64610 90.3 1.5e-216 748.8
Csa05g01535 . 49 449 C2H2 Transcription Factor Family AT5G09740 72.1 5.4e-159 557.4
Csa05g01981 . 1 384 C2H2 Transcription Factor Family AT2G01650 53.9 7.0e-109 391.0
Csa03g04274 . 1 425 C2H2 Transcription Factor Family AT1G75710 58.3 9.9e-134 473.8
Csa05g01505 . 157 424 C2H2 Transcription Factor Family AT1G75710 54.6 4.0e-82 302.4
Csa06g01436 . 18 369 C2H2 Transcription Factor Family AT2G29660 57.9 1.2e-100 363.6
Csa03g00581 . 1 406 C2H2 Transcription Factor Family AT4G27240 63.0 7.1e-134 474.2
Csa03g02277 . 1 416 C2H2 Transcription Factor Family AT4G27240 58.2 3.3e-123 438.7
Csa05g01505 . 195 397 C2H2 Transcription Factor Family AT4G27240 51.2 2.3e-52 203.4
Csa03g00581 . 1 436 C2H2 Transcription Factor Family AT5G54630 65.9 7.4e-161 563.9
Csa03g02277 . 1 446 C2H2 Transcription Factor Family AT5G54630 64.2 1.2e-150 530.0
Csa01g00207 . 48 1605 C2H2 Transcription Factor Family AT3G47890 54.4 0.0e+00 1530.4
Csa01g00207 . 52 1605 C2H2 Transcription Factor Family AT3G47910 54.6 0.0e+00 1553.9
Csa03g00314 . 4 355 C2H2 Transcription Factor Family AT4G12240 58.8 4.0e-114 408.3
Csa04g02437 . 84 337 C2H2 Transcription Factor Family AT4G12240 50.4 9.1e-58 221.1
Csa04g02437 . 44 417 C2H2 Transcription Factor Family AT5G52010 65.0 2.0e-130 462.6
Csa03g03370 . 1 316 C2H2 Transcription Factor Family AT5G03740 51.9 4.2e-45 178.7
Csa01g03338 . 1 106 C2H2 Transcription Factor Family AT3G02790 75.5 2.7e-42 167.9
Csa01g03338 . 1 106 C2H2 Transcription Factor Family AT5G16470 74.8 4.7e-39 157.1
Csa04g01079 . 1 252 C2H2 Transcription Factor Family AT3G57480 58.9 6.6e-84 307.4
Csa04g01079 . 1 247 C2H2 Transcription Factor Family AT2G41835 65.5 7.4e-92 334.0
Csa01g00080 . 10 279 C2H2 Transcription Factor Family AT5G63280 57.0 2.1e-91 332.4
Csa03g02532 . 1 282 C2H2 Transcription Factor Family AT5G63280 51.8 6.5e-85 310.8
Csa05g02873 . 58 626 C2H2 Transcription Factor Family AT3G12270 55.8 1.6e-176 616.3
Csa06g02130 . 10 322 C2H2 Transcription Factor Family AT1G01350 73.6 4.5e-131 464.5
Csa05g01335 . 481 615 C2H2 Transcription Factor Family AT5G61190 80.0 6.8e-58 223.0
Csa01g02688 . 23 300 C2H2 Transcription Factor Family AT5G26610 69.6 3.9e-78 288.5
Csa06g02174 . 46 360 C2H2 Transcription Factor Family AT1G43860 57.8 7.8e-104 374.0
Csa07g01091 . 1 209 C2H2 Transcription Factor Family AT1G50670 77.5 3.8e-93 337.8
Csa03g02502 . 1 396 C2H2 Transcription Factor Family AT1G55460 72.0 2.5e-165 578.6
Csa02g00488 . 4 148 C2H2 Transcription Factor Family AT3G05760 78.6 1.4e-60 229.2
Csa03g03317 . 1 228 C2H2 Transcription Factor Family AT2G32600 87.3 7.6e-113 403.7
Csa03g02581 . 1 509 C2H2 Transcription Factor Family AT5G06160 74.5 1.2e-217 752.7
Csa01g01448 . 20 455 C2H2 Transcription Factor Family AT2G27760 59.7 3.0e-146 515.4
Csa01g00289 . 3 589 C2H2 Transcription Factor Family AT1G74250 51.1 9.0e-138 487.6
Csa06g02611 . 3 118 C2H2 Transcription Factor Family AT2G36930 75.9 1.2e-48 189.9
Csa02g00947 . 91 412 C2H2 Transcription Factor Family AT1G04850 73.8 1.1e-107 386.7
Csa03g04394 . 1 396 C2H2 Transcription Factor Family AT4G31420 65.3 1.1e-128 456.8
Csa03g03266 . 62 210 C2H2 Transcription Factor Family AT2G02080 80.5 7.1e-73 271.6
Csa07g01699 . 74 212 C2H2 Transcription Factor Family AT2G02080 83.5 6.0e-72 268.5
Csa02g02630 . 52 190 C2H2 Transcription Factor Family AT2G02080 84.2 1.0e-71 267.7
Csa07g02385 . 70 210 C2H2 Transcription Factor Family AT2G02080 83.7 2.3e-71 266.5
Csa03g04077 . 79 218 C2H2 Transcription Factor Family AT2G02080 83.6 3.9e-71 265.8
Csa04g02543 . 87 236 C2H2 Transcription Factor Family AT2G02080 80.0 3.9e-71 265.8
Csa06g03225 . 56 194 C2H2 Transcription Factor Family AT2G02080 81.3 6.6e-71 265.0
Csa06g02557 . 93 234 C2H2 Transcription Factor Family AT2G02080 81.7 1.9e-70 263.5
Csa01g01294 . 55 193 C2H2 Transcription Factor Family AT2G02080 80.6 4.3e-70 262.3
Csa04g00519 . 52 189 C2H2 Transcription Factor Family AT2G02080 80.4 2.1e-69 260.0
Csa01g02773 . 69 205 C2H2 Transcription Factor Family AT2G02080 83.2 5.3e-68 255.4
Csa02g02036 . 57 189 C2H2 Transcription Factor Family AT2G02080 78.9 2.6e-67 253.1
Csa07g01808 . 14 132 C2H2 Transcription Factor Family AT2G02080 80.7 4.5e-59 225.7
Csa01g00488 CCT,ECH 56 199 C2H2 Transcription Factor Family AT2G02080 56.9 1.3e-47 187.6
Csa01g00739 CCT,ECH 52 184 C2H2 Transcription Factor Family AT2G02080 57.9 1.3e-45 181.0
Csa05g01292 . 57 195 C2H2 Transcription Factor Family AT2G02080 56.1 2.8e-45 179.9
Csa05g02849 . 23 255 C2H2 Transcription Factor Family AT3G07940 61.8 2.3e-74 275.8
Csa05g01664 . 35 325 C2H2 Transcription Factor Family AT3G07940 51.9 2.5e-68 255.8
Csa06g03849 . 55 376 C2H2 Transcription Factor Family AT4G05330 73.8 4.0e-140 494.6
Csa01g02626 . 1 334 C2H2 Transcription Factor Family AT4G05330 66.5 3.4e-131 464.9
Csa06g03849 . 55 376 C2H2 Transcription Factor Family AT4G21160 74.5 1.6e-141 499.2
Csa01g02626 . 1 334 C2H2 Transcription Factor Family AT4G21160 67.0 8.0e-133 470.3
Csa06g01917 . 1 917 C2H2 Transcription Factor Family AT1G43850 58.0 8.2e-214 740.7
Csa06g02175 . 1 913 C2H2 Transcription Factor Family AT1G43850 54.2 4.1e-205 711.8
Csa05g00586 CCT,ECH 273 559 C2H2 Transcription Factor Family AT1G43850 57.8 7.2e-93 339.0
Csa03g01685 CCT,ECH 268 555 C2H2 Transcription Factor Family AT1G43850 58.0 2.1e-92 337.4
Csa06g02676 . 1 174 C2H2 Transcription Factor Family AT3G52800 60.2 1.8e-48 189.1
Csa01g00080 . 11 205 C2H2 Transcription Factor Family AT5G40710 57.4 8.6e-65 243.8
Csa03g02532 . 56 204 C2H2 Transcription Factor Family AT5G40710 65.1 1.2e-63 240.0
Csa05g02017 . 38 165 C2H2 Transcription Factor Family AT1G70790 59.2 1.4e-41 166.0
Csa03g02120 . 38 165 C2H2 Transcription Factor Family AT1G70790 59.2 2.3e-39 158.7
Csa05g01141 . 94 211 C2H2 Transcription Factor Family AT1G70790 58.3 5.6e-38 154.1
Csa01g00436 . 55 181 C2H2 Transcription Factor Family AT1G70790 57.4 8.1e-37 150.2
Csa04g00203 . 44 219 C2H2 Transcription Factor Family AT5G10970 51.1 9.3e-39 157.5
Csa03g01433 . 11 413 C2H2 Transcription Factor Family AT5G18550 60.5 7.6e-62 235.0
Csa04g02015 . 6 605 C2H2 Transcription Factor Family AT5G39550 62.3 2.6e-222 768.5
Csa05g00936 . 23 620 C2H2 Transcription Factor Family AT5G39550 61.6 4.6e-219 757.7
Csa05g02902 . 6 261 C2H2 Transcription Factor Family AT5G40310 60.4 3.1e-90 328.9
Csa05g02903 . 15 270 C2H2 Transcription Factor Family AT5G40310 58.3 1.1e-87 320.5
Csa05g01754 . 4 295 C2H2 Transcription Factor Family AT5G20220 64.2 5.9e-98 354.8
Csa01g03342 . 28 303 C2H2 Transcription Factor Family AT5G16540 68.0 8.6e-61 230.7
Csa07g01329 . 227 509 C2H2 Transcription Factor Family AT1G34370 70.6 1.3e-115 412.9
Csa06g03152 . 123 336 C2H2 Transcription Factor Family AT1G34370 56.0 1.1e-66 250.4
Csa01g00396 . 47 1255 C2H2 Transcription Factor Family AT3G18290 69.1 0.0e+00 1667.9
Csa05g02629 . 12 1200 C2H2 Transcription Factor Family AT3G18290 59.0 0.0e+00 1372.8
Csa01g03540 . 10 491 C2H2 Transcription Factor Family AT5G22480 75.7 6.3e-211 730.3
Csa04g02251 . 7 334 C2H2 Transcription Factor Family AT3G14740 58.0 5.9e-107 384.4
Csa04g00425 . 79 258 C2H2 Transcription Factor Family AT5G07500 53.7 1.2e-56 216.9
Csa05g00823 . 184 332 C2H2 Transcription Factor Family AT5G07500 53.7 7.5e-48 187.6
Csa03g02908 . 239 359 C2H2 Transcription Factor Family AT5G07500 62.8 2.2e-47 186.0
Csa02g00066 . 80 201 C2H2 Transcription Factor Family AT5G07500 66.4 1.1e-46 183.7
Csa06g01420 . 196 316 C2H2 Transcription Factor Family AT5G07500 62.8 1.4e-46 183.3
Csa03g03622 . 213 333 C2H2 Transcription Factor Family AT5G07500 61.2 3.2e-46 182.2
Csa07g00484 . 81 187 C2H2 Transcription Factor Family AT5G07500 69.2 1.2e-45 180.3
Csa01g02890 . 90 196 C2H2 Transcription Factor Family AT5G07500 68.2 3.5e-45 178.7
Csa04g02516 . 54 178 C2H2 Transcription Factor Family AT5G07500 61.4 3.5e-45 178.7
Csa02g01860 . 56 172 C2H2 Transcription Factor Family AT5G07500 60.2 9.5e-43 170.6
Csa03g03622 . 3 694 C2H2 Transcription Factor Family AT5G12850 51.5 1.3e-185 646.7
Csa03g02908 . 1 672 C2H2 Transcription Factor Family AT5G12850 53.0 4.6e-183 638.3
Csa01g02890 . 84 198 C2H2 Transcription Factor Family AT5G12850 69.6 1.2e-50 198.4
Csa04g02516 . 72 180 C2H2 Transcription Factor Family AT5G12850 69.7 5.2e-49 193.0
Csa02g00066 . 81 216 C2H2 Transcription Factor Family AT5G12850 62.5 8.8e-49 192.2
Csa07g00484 . 81 191 C2H2 Transcription Factor Family AT5G12850 67.6 7.4e-48 189.1
Csa02g01860 . 56 211 C2H2 Transcription Factor Family AT5G12850 52.4 5.3e-46 183.0
Csa04g00425 . 80 190 C2H2 Transcription Factor Family AT5G12850 65.8 3.5e-45 180.3
Csa03g03897 . 3 193 C2H2 Transcription Factor Family AT3G28210 57.6 4.1e-62 234.6
Csa01g03093 . 47 752 C2H2 Transcription Factor Family AT2G27100 63.3 1.9e-224 775.8
Csa06g03294 . 107 322 C2H2 Transcription Factor Family AT5G66350 55.5 1.3e-55 213.8
Csa03g04251 CCT,ECH 70 290 C2H2 Transcription Factor Family AT5G66350 50.4 1.3e-50 197.2
Csa07g00507 . 63 241 C2H2 Transcription Factor Family AT5G66350 50.8 8.8e-44 174.5
Csa04g00536 . 82 224 C2H2 Transcription Factor Family AT5G66350 53.0 4.5e-40 162.2
Csa06g02517 CCT 147 298 C2H2 Transcription Factor Family AT5G66350 52.6 1.2e-37 154.1
Csa06g03294 . 107 258 C2H2 Transcription Factor Family AT2G21400 51.9 2.1e-37 152.5
Csa03g04251 CCT,ECH 107 237 C2H2 Transcription Factor Family AT2G21400 55.6 6.0e-37 151.0
Csa07g00507 . 97 240 C2H2 Transcription Factor Family AT2G21400 51.4 1.0e-36 150.2
Csa06g03294 . 108 261 C2H2 Transcription Factor Family AT2G18120 53.9 8.9e-40 160.6
Csa03g04251 CCT,ECH 108 246 C2H2 Transcription Factor Family AT2G18120 52.8 4.1e-37 151.8
Csa06g03294 . 107 332 C2H2 Transcription Factor Family AT1G75520 52.7 5.3e-55 211.8
Csa06g02517 CCT 147 298 C2H2 Transcription Factor Family AT1G19790 51.3 1.4e-36 150.6
Csa06g03294 . 107 332 C2H2 Transcription Factor Family AT3G51060 57.4 5.3e-61 231.9
Csa03g04251 CCT,ECH 54 238 C2H2 Transcription Factor Family AT3G51060 51.9 5.1e-48 188.7
Csa06g03294 . 108 267 C2H2 Transcription Factor Family AT4G36260 59.1 3.1e-41 166.0
Csa04g02111 CCT,ECH 101 313 C2H2 Transcription Factor Family AT1G34790 63.8 4.0e-83 305.1
Csa04g01407 . 156 328 C2H2 Transcription Factor Family AT1G34790 74.6 5.8e-82 301.2
Csa03g03608 CCT,ECH 153 313 C2H2 Transcription Factor Family AT1G34790 77.6 2.9e-81 298.9
Csa01g01464 . 92 307 C2H2 Transcription Factor Family AT1G34790 61.9 5.4e-80 294.7
Csa07g02025 . 109 275 C2H2 Transcription Factor Family AT1G34790 76.0 2.7e-79 292.4
Csa05g01484 . 95 255 C2H2 Transcription Factor Family AT1G34790 75.8 1.0e-78 290.4
Csa04g02471 . 1 250 C2H2 Transcription Factor Family AT1G27730 50.6 2.9e-46 182.2
Csa01g03342 . 28 386 C2H2 Transcription Factor Family AT3G02830 64.5 4.5e-76 282.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000024 10 17 6 10 10 12 10 11 13 12 12 12 20 13 13 19 13 19 19 12 14 12 15 15 15 13 15 22 23 11 418
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31495 PF00096 zf-C2H2 0.0039 CL0361 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00519 Csa_Chr04 FPKM 28.405405 31.435869 48.433495 48.936687 49.712429 56.631569 45.502762 43.315453 42.978359 37.702011