Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00521 ATGCTAACAAGATCTGTTTTGAGGCTTAATACTACTACATGCTCTGATGTTCAGAAAGCAATAGCCGCTGGACAACAAAGTGGGCTGTGCTATATAAACAGTTTGCTGCTTGGACGAGGGGAATTGTCATCGAAGGATTGCCGGGTGTCTCATTCCTTGCCATATTCCACATTTTCAATATCAAAAGCTTTGAATTTTTCACCAACATTCCCGTTCAATAGAAAAACTATGGCGGCTTCTAGTGCTAAATCTGTTTCTAGAGATGTCTATCTTGAAAATTTCGTCACAAACCGTGGAAACGGTTTTGCAACACCTGTGCGAGTGTTCAATCATAGAAGTTATGGGAATTTCCAGAAAGCTCGTATGAGTTTGAGAAGGAAACAGGCATCCAATAATTGTCTAATCTCTAACAGTTCAATTGATCTAATGCGTGTGAAGGGCAACTGCTTTCTACAAGTTGGGGTGACCAATCTTCATGCCTTACCTCATGCATGCTATGCTGCAGGGACTGCTAATTCTCCGGCTTTTGACAGCAATTCTCGTGATGATCAGTTCCCAAACTCGACCACTTTGCCAAGCAAAGGTTTATTAGGTGAAAGAACTTTGAAGCTGCTTTCAGGATCATGCTATCTTCCCCATCCTGATAAAGAAGAGACGGGAGGAGAGGATGCTCATTTTATTTGTGTGGAGGAACATGTAGTTGGCGTTGCGGATGGTGTAGGTGGTTGGGCAGATGTTGGGATTGATGCTGGAAAGTTTGCTCGCGAACTTATGTCAAACTCGATAAATGCCATACAGGAGCAGCCTGGGGAATCAGTTGACCCTGCCAAGGTGTTAGAGAAAGCTCACTCCGGCACTACGGCTAAAGGTTCTTCAACAGCCTGCATCATTTCTCTTTCTGAAAAGGGACTCCATGCTATCAATCTGGGGGATAGTGGATTCATAGTTATAAGAGATGGAAGCACTATTTTCAGATCCCCCGTTCAGCAACATGGCTTCAATTTTACTTATCAGTTGGAGAGCGGCAATGGTGGTGATTTACCCAGCTCTGGAGAGATTTTTATGATACCTGTCGCTCTGGGAGATGTCATAGTTGCCGGAACGGATGGCTTATTTGACAATCTATACAGTAATGAGATTTCAGCAGTTGTAGTTAACGCAGTTAGATCTGGGTTGGAACCCGAAGCAACTGCTCAAAACATAGCTGCTTTAGCACGCCAAAGAGCACTTGATAGGAACCGACAAACCCCATTTTCTGCTGCTGCCCAAGAGGCTGGTTATCGCTACTACGGTGGTAAGCTGGATGATATCACTGTTGTTGTCTCGTACATAACAAATTCCACAAGTACATGA 1353 43.9 MLTRSVLRLNTTTCSDVQKAIAAGQQSGLCYINSLLLGRGELSSKDCRVSHSLPYSTFSISKALNFSPTFPFNRKTMAASSAKSVSRDVYLENFVTNRGNGFATPVRVFNHRSYGNFQKARMSLRRKQASNNCLISNSSIDLMRVKGNCFLQVGVTNLHALPHACYAAGTANSPAFDSNSRDDQFPNSTTLPSKGLLGERTLKLLSGSCYLPHPDKEETGGEDAHFICVEEHVVGVADGVGGWADVGIDAGKFARELMSNSINAIQEQPGESVDPAKVLEKAHSGTTAKGSSTACIISLSEKGLHAINLGDSGFIVIRDGSTIFRSPVQQHGFNFTYQLESGNGGDLPSSGEIFMIPVALGDVIVAGTDGLFDNLYSNEISAVVVNAVRSGLEPEATAQNIAALARQRALDRNRQTPFSAAAQEAGYRYYGGKLDDITVVVSYITNSTST* 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3413043 3416302 + CsaV3_4G005210.1 Csa04g00521 526131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00521 450 PANTHER PROTEIN PHOSPHATASE 2C 57 449 IPR039123 -
Csa04g00521 450 SUPERFAMILY PP2C-like 209 442 IPR036457 -
Csa04g00521 450 SMART PP2C_4 195 442 IPR001932 -
Csa04g00521 450 SMART PP2C_SIG_2 204 444 IPR001932 -
Csa04g00521 450 PANTHER PROTEIN PHOSPHATASE 57 449 - -
Csa04g00521 450 Gene3D - 336 449 IPR036457 -
Csa04g00521 450 Gene3D - 215 334 IPR036457 -
Csa04g00521 450 Pfam Stage II sporulation protein E (SpoIIE) 233 442 IPR001932 -
Csa04g00521 450 ProSiteProfiles PPM-type phosphatase domain profile. 205 444 IPR001932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00521 K17508 PTC7, PPTC7; protein phosphatase PTC7 [EC:3.1.3.16] - csv:101215706 866.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04189 Csa-Chr3:36737678 Csa04g00521 Csa-Chr4:3413043 9.58E-153 dispersed
Csa04g00521 Csa-Chr4:3413043 Csa04g02281 Csa-Chr4:23405238 7.80E-60 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g935 Blo04g00925 . . . Bpe15g00436 . . . Cmo04g00831 Cmo16g00707 . . . . . . . . . . . . . . . . . . . . . Cone8ag0798 Cone12ag0755 Cone6ag1609 Cone9ag1536 . . Chy07g01279 . . . . . . . . . . . . Cma16g00650 . . . . Cpe14g00554 . . . . . . . Cla07g00856 Cam07g0928 Cec07g0993 . Clacu07g0902 Cmu07g0902 Cre07g1270 Lsi07g00217 Csa04g00521 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00521 Csa_Chr04 FPKM 1.86217 2.555267 2.797 4.180645 3.574782 5.489953 3.489201 5.628861 5.297892 4.251177