Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00523 ATGAGAGTTCCTGTTTCCAACAACCAATTATCCTTACCCTCTTCTAATCCTAACCCAAACCCTAAACTCCATTCCTCTCCTTCTACCATCGCCTTCAACACTCCCACCACTATCACCACCGCCTCCTCCACTACCTGTTACGAGCCCACCTCCGTCCTTGATCTCCGCCGCAGCCCTAGCCCCGTGGCGCCCGACAACCCCCTCTCCTCCGCCGATGACCGCCACAACAACCATCCTCTAGATTGGGATGAACAAGCTCTTCATAATTTGGATTGGGACTCCATCATGGGTGACTTGGGCTTACATGATGATTCCAATTCTTCTCTAAAAAACAACACTAATCATGATCATGTTCCTCACTTCCCTGAATTTCTCCATTCCCAATCCTTGGATCATACCTCCCACCTTCTTCCCCCTGATTTCTTCCTCTCTGAGCCCTTCTCAAATCACCCCCCCACCGTCCTCCAATCCTTCAATTCCTTCAATCCCAACAACCCATCTCTCGATTTCCTCGAAGATCTCATCGCCGCTGCCGATTGCTTCGATTCCAATGATTTCCAACTCGCTCATGTGATATTGGAACGGCTCAATCAACGCCTTCAATCCACTTCCTCCACCAACCCTCTTCACCGGGCTGCCTTTTTCTTCAAAGAAGCTCTTCAATCTCTCCTTTCTCCCTCTCCCAATCGCCATAATCGCCTCTCTTCCTGGCCCGATATCGTCCATACCATCAAAGCTTACAAGGCCTTCTCTGTTATTTCTCCGATCCCCATGTTTTCTCACTTCACCACCAATCAAGCCCTTCTCGAAGCTCTCAACGCTTCCTCAATCATTCATATTATTGATTTCGATATCGGATTTGGTGGGCAGTACGCATCTTTCATGAAAGAGATCGTCGAAAAAGCAGAGTCTAGGAATGTTGTTCTTCTTAGGATTACTGCAGTGGTGCCGGAGGAATTTGCGATTGAGAGTAGGTTGATCAGGGAGAACCTCTGCCAATTCGCCCAGGATTTAAAAATTCGATTTCATATAGATCTCGTCCCGCTTCGAACTTTCCAGACGTTGTCTTTCAAATCGGTGAAATTCATGGAAGGAGAGAAGTCGGCGATTCTGTTAAGTCCGACCATCTTTTCCCGTCTTGGGAGTATAAATAGCGTAGCCTCTTTTCTTGGCGACGTGCGGCGGGTGTCGCCGTGTGTGGTCGTGTTCGTCGACGGTGACGGGTGGTCGGACTCCGGCGCAACGTCGTTCAAGAGAAATTTGATGGATAGTCTAGAGTTTTACGCACTTATGTTGGAGTCGTTGGACGCGGCGGGGGCTAGCGGTGAGTGGGTGAGGAGGATTGAAACGTTCGTAGTCCGGCCGAAAATAGTGGCGGCAGTTGAAGGGGCGGGAAGAATGGCGGCACCGCCGTGGAGAGAGGTGTTCCATGGGGCCGGGATGAAACCGGTGGCGTTGAGTCAGTTTGCAGACTTTCAAGCGGAGTGCTTACTTGGGAAAATACAAGTTCGAGGGTTCCAAATAGGGAAACGAAATGCTGAGCTGGTGCTGTGTTGGCATGAGAGGCCTCTAGTGGCCACGTCGGCATGGAGGTGCTAA 1599 50.28 MRVPVSNNQLSLPSSNPNPNPKLHSSPSTIAFNTPTTITTASSTTCYEPTSVLDLRRSPSPVAPDNPLSSADDRHNNHPLDWDEQALHNLDWDSIMGDLGLHDDSNSSLKNNTNHDHVPHFPEFLHSQSLDHTSHLLPPDFFLSEPFSNHPPTVLQSFNSFNPNNPSLDFLEDLIAAADCFDSNDFQLAHVILERLNQRLQSTSSTNPLHRAAFFFKEALQSLLSPSPNRHNRLSSWPDIVHTIKAYKAFSVISPIPMFSHFTTNQALLEALNASSIIHIIDFDIGFGGQYASFMKEIVEKAESRNVVLLRITAVVPEEFAIESRLIRENLCQFAQDLKIRFHIDLVPLRTFQTLSFKSVKFMEGEKSAILLSPTIFSRLGSINSVASFLGDVRRVSPCVVVFVDGDGWSDSGATSFKRNLMDSLEFYALMLESLDAAGASGEWVRRIETFVVRPKIVAAVEGAGRMAAPPWREVFHGAGMKPVALSQFADFQAECLLGKIQVRGFQIGKRNAELVLCWHERPLVATSAWRC* 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3443239 3445837 + CsaV3_4G005230.1 Csa04g00523 526133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00523 532 MobiDBLite consensus disorder prediction 1 51 - -
Csa04g00523 532 Pfam GRAS domain family 172 531 IPR005202 -
Csa04g00523 532 MobiDBLite consensus disorder prediction 1 81 - -
Csa04g00523 532 PANTHER SCARECROW-LIKE PROTEIN 15 16 531 - -
Csa04g00523 532 ProSiteProfiles GRAS family profile. 161 531 IPR005202 -
Csa04g00523 532 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 531 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00523 - - - csv:116401665 995.727
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00523 Csa-Chr4:3443239 Csa06g00917 Csa-Chr6:7387575 2.02E-63 dispersed
Csa04g00522 Csa-Chr4:3427568 Csa04g00523 Csa-Chr4:3443239 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g933 Blo04g00926 . . . Bpe15g00438 . . . Cmo04g00840 Cmo16g00706 . . . . . . . . . . . . . . . . . . . . . . Cone12ag0754 . . . . Chy07g01294 . . . . . . . . . . . . Cma16g00649 . . . . Cpe14g00553 . . . . . . . Cla07g00854 Cam07g0926 Cec07g0991 Cco07g0968 Clacu07g0901 Cmu07g0901 Cre07g1267 Lsi07g00218 Csa04g00523 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004174 0 0 1 0 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 2 1 1 1 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31497 PF03514 GRAS 7.10E-85 CL0063 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00523 Csa_Chr04 FPKM 32.207458 29.317524 3174.605225 3001.749512 1.165783 0.545795 1.871972 1.904529 1.778063 1.508689