Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g00524 | ATGAACCAACAACAAACTGATCAAGAACATCAATCAGTACAAATCTCTCAGTTGTACAATGGATTATACATCCAAATGCTACCCCAACAAGTTCATTTGGGCGAGTCTAAACCGAGACGACGTCGTAAGAAGAACAGAGGATCCGAAACAGAGGCAGCGTCGGGTGGGAAAAAGAGGAAGCTGACGGCGGCGCAAGTTCGTCTTTTGGAGTCCAATTTTGGTAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGGTTAGCGTCGGAGTTGGGGTTGGATCCCCGGCAGGTGGCTGTGTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAACTTGAGGAGGAGTATTCTAATTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACAGAGCTGTTGAAGCTAAAAGAGCAACTATTAGAAGTAGAGAAAGAGAAAGAGAGGGTAAGAATGGGAGAAGGGGGTGATGGGCCATTAAGTAGTAGTAGCCCAAGCCCATCAATGTCAATGGAAGCTATGGAGATGGAGCAACCCATATCCCTTGGGGAAATTTCACCATTATATGAAGAAGATGTGTTTTATTACATGCCTGAAAATTATTGTATTTATGGCATGGAATGGCCTAATCCCTACCTTTGA | 660 | 44.39 | MNQQQTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRKLTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAMEMEQPISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYL* | 220 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3446253 | 3448350 | - | CsaV3_4G005240.1 | Csa04g00524 | 526134 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g00524 | 219 | Gene3D | - | 48 | 120 | - | - | |
Csa04g00524 | 219 | SUPERFAMILY | Homeodomain-like | 56 | 120 | IPR009057 | - | |
Csa04g00524 | 219 | SMART | HOX_1 | 55 | 116 | IPR001356 | GO:0003677 | |
Csa04g00524 | 219 | PRINTS | Lambda-repressor HTH signature | 83 | 92 | IPR000047 | GO:0003677 | |
Csa04g00524 | 219 | PRINTS | Lambda-repressor HTH signature | 92 | 108 | IPR000047 | GO:0003677 | |
Csa04g00524 | 219 | Pfam | Homeodomain | 57 | 111 | IPR001356 | GO:0003677 | |
Csa04g00524 | 219 | MobiDBLite | consensus disorder prediction | 30 | 61 | - | - | |
Csa04g00524 | 219 | CDD | homeodomain | 57 | 113 | IPR001356 | GO:0003677 | |
Csa04g00524 | 219 | MobiDBLite | consensus disorder prediction | 153 | 176 | - | - | |
Csa04g00524 | 219 | ProSiteProfiles | 'Homeobox' domain profile. | 52 | 112 | IPR001356 | GO:0003677 | |
Csa04g00524 | 219 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE | 9 | 218 | - | - | |
Csa04g00524 | 219 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 9 | 218 | IPR045224 | GO:0003700 | |
Csa04g00524 | 219 | Coils | Coil | 104 | 131 | - | - | |
Csa04g00524 | 219 | Coils | Coil | 135 | 159 | - | - | |
Csa04g00524 | 219 | ProSitePatterns | 'Homeobox' domain signature. | 87 | 110 | IPR017970 | GO:0000981|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g00524 | Csa-Chr4:3446253 | Csa06g03219 | Csa-Chr6:27254198 | 7.13E-60 | dispersed | |
Csa04g00524 | Csa-Chr4:3446253 | Csa01g00793 | Csa-Chr1:5021575 | 1.25E-26 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31498 | PF00046 | Homeodomain | 4.30E-17 | CL0123 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g00524 | K09338 | - | csv:101221080 | 378.252 |