Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00524 ATGAACCAACAACAAACTGATCAAGAACATCAATCAGTACAAATCTCTCAGTTGTACAATGGATTATACATCCAAATGCTACCCCAACAAGTTCATTTGGGCGAGTCTAAACCGAGACGACGTCGTAAGAAGAACAGAGGATCCGAAACAGAGGCAGCGTCGGGTGGGAAAAAGAGGAAGCTGACGGCGGCGCAAGTTCGTCTTTTGGAGTCCAATTTTGGTAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGGTTAGCGTCGGAGTTGGGGTTGGATCCCCGGCAGGTGGCTGTGTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAACTTGAGGAGGAGTATTCTAATTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACAGAGCTGTTGAAGCTAAAAGAGCAACTATTAGAAGTAGAGAAAGAGAAAGAGAGGGTAAGAATGGGAGAAGGGGGTGATGGGCCATTAAGTAGTAGTAGCCCAAGCCCATCAATGTCAATGGAAGCTATGGAGATGGAGCAACCCATATCCCTTGGGGAAATTTCACCATTATATGAAGAAGATGTGTTTTATTACATGCCTGAAAATTATTGTATTTATGGCATGGAATGGCCTAATCCCTACCTTTGA 660 44.39 MNQQQTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRKLTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAMEMEQPISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYL* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3446253 3448350 - CsaV3_4G005240.1 Csa04g00524 526134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00524 219 Gene3D - 48 120 - -
Csa04g00524 219 SUPERFAMILY Homeodomain-like 56 120 IPR009057 -
Csa04g00524 219 SMART HOX_1 55 116 IPR001356 GO:0003677
Csa04g00524 219 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Csa04g00524 219 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Csa04g00524 219 Pfam Homeodomain 57 111 IPR001356 GO:0003677
Csa04g00524 219 MobiDBLite consensus disorder prediction 30 61 - -
Csa04g00524 219 CDD homeodomain 57 113 IPR001356 GO:0003677
Csa04g00524 219 MobiDBLite consensus disorder prediction 153 176 - -
Csa04g00524 219 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Csa04g00524 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 9 218 - -
Csa04g00524 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 9 218 IPR045224 GO:0003700
Csa04g00524 219 Coils Coil 104 131 - -
Csa04g00524 219 Coils Coil 135 159 - -
Csa04g00524 219 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00524 Csa-Chr4:3446253 Csa06g03219 Csa-Chr6:27254198 7.13E-60 dispersed
Csa04g00524 Csa-Chr4:3446253 Csa01g00793 Csa-Chr1:5021575 1.25E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31498 PF00046 Homeodomain 4.30E-17 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00524 K09338 - csv:101221080 378.252