Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00525 ATGGAATACCAAATATTCCTTTTGATTTTGCTTGTTGCTTTCATTCCAAGAACCATTCTTGGTCAAAATGTTACAATGGGTAAAATTGTGGTTGAGGGAATCACAAAAATAGCAGAAACTGATGAGAATTTCATTTGCTTCACTTTGGACATTTGGCCTCATGATGAGTGCAGTCAACCCAACCTTTGTGTTTGGGATAGTCATGCATCAGTCCTCAATGTGGATTTGTCTCTTCCTATCATCAATAAAGCCGTTCAAGCTTTCAAGACATTACGAATTAGAGTTGGAGGTACCTTGCAAGATAGGTTGATTTATAATATTGGAGAAGGCTTCAAGGGCAATTGTCATCCATTTGAAGCTGATGATAGTTTACTATTTGACTTTACCGAAGGATGTTTGTATATGGAAAGGTGGGATGATTTGAACAACTTTTTTAACAATACAGGGGCCATTGTAACTTTTGGCTTAAATGCTCTATTGGGTAAGTACCATACACAAGGAATGCAATGGGAAGGCAATTGGAACTACACTAATGCTGAAGCTCTAATTAAATATACTGTGGACAAGAATTATCAAATAAACTCATGGGAGTTTGGCAATGAATTGGCTGGACGAAACAGTATTGGTGCAAGCATTAGTGCTTCACAATATGCAAAAGACCTACTAAAGCTTCGAGAAATCGTAGATCGTTTATACAAAAATTCCCAACAAAAACCTTTGATTGTGGCACCTGGTGCATTCTTTGATGACAAATGGTACCATGAACTTGTTACAAAAACTGGACCAAAGGTTGTTAGTGTTCTCACTCACCATATCTATAACATGGGTGCAGGTGATGATCCCAAATTGATTTATAGGTTTGTTAATCCAACATACCTAAGTCAAGTATCAAACACATTTAAACAACTTAAGAACATAGTTCAAAAGCATGCCCCTTGGTCTTCTGCTTGGGTTGGTGAAGCTGGTGGAGCCTATCAAGGTGGAGCCTATCGTATTTCTGATTCATTTATCAATAGTTTTTGGTACTTAGATCAACTTGGGATGGCCGCTTTCTACAATACCAAAGTATATTGTAGACAAACTTTGATCGGTGGATTTTACAGTGTCCTCAAAGCTAAAACTTTAGTCCCTACACCGGATTATTATGGTGCACTTCTCTTCCACCGACTTATGGGTCCAGGTGTTCTCAAAGTTCATAACAAAGTCTCTACTTATCTCCGCACCTATGCTCATTGCTCAAGAGAAAGGTCTGGCATATCCATGCTTTTCATCAATTTGAGCAATACAACCGAATTTGCAATAAACGTCAAAGACCACATGACCCTAAGTTTGCACAAAAGAAGGAAGCCCAAGCATGGTTCATCTTCAATTAATAATTTGGGAACACCAAGGGAGGAATATCATTTGACACCACAAAATGGTCTTCTTAGAAGCTCTAATGTGCTTTTAAATGGAAAGGCATTGCAACTTACAAGCGAAGGAGAATTGCCAAATCTTACACCAATTTATAAAGACAGCAACTCTTCTATAAATATTGCTACCTGGTCGATTGCCTTCGTTGTCATCCCTGACTTTGTAGCTATTGGGTGCAACTAA 1596 38.28 MEYQIFLLILLVAFIPRTILGQNVTMGKIVVEGITKIAETDENFICFTLDIWPHDECSQPNLCVWDSHASVLNVDLSLPIINKAVQAFKTLRIRVGGTLQDRLIYNIGEGFKGNCHPFEADDSLLFDFTEGCLYMERWDDLNNFFNNTGAIVTFGLNALLGKYHTQGMQWEGNWNYTNAEALIKYTVDKNYQINSWEFGNELAGRNSIGASISASQYAKDLLKLREIVDRLYKNSQQKPLIVAPGAFFDDKWYHELVTKTGPKVVSVLTHHIYNMGAGDDPKLIYRFVNPTYLSQVSNTFKQLKNIVQKHAPWSSAWVGEAGGAYQGGAYRISDSFINSFWYLDQLGMAAFYNTKVYCRQTLIGGFYSVLKAKTLVPTPDYYGALLFHRLMGPGVLKVHNKVSTYLRTYAHCSRERSGISMLFINLSNTTEFAINVKDHMTLSLHKRRKPKHGSSSINNLGTPREEYHLTPQNGLLRSSNVLLNGKALQLTSEGELPNLTPIYKDSNSSINIATWSIAFVVIPDFVAIGCN* 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3460824 3463406 + CsaV3_4G005250.1 Csa04g00525 526135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00525 531 Pfam Glycosyl hydrolase family 79, N-terminal domain 28 347 IPR005199 GO:0016020|GO:0016798
Csa04g00525 531 PANTHER HEPARANASE-RELATED 1 531 - -
Csa04g00525 531 Gene3D Glycosidases 65 389 - -
Csa04g00525 531 PANTHER HEPARANASE-LIKE PROTEIN 1 1 531 - -
Csa04g00525 531 SUPERFAMILY (Trans)glycosidases 41 391 IPR017853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00525 K07964 HPSE; heparanase [EC:3.2.1.166] - csv:101212628 934.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01501 Csa-Chr3:11139026 Csa04g00525 Csa-Chr4:3460824 0 dispersed
Csa04g00525 Csa-Chr4:3460824 Csa05g01539 Csa-Chr5:17970201 0 dispersed
Csa04g00525 Csa-Chr4:3460824 Csa01g00579 Csa-Chr1:3715813 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g877 . . . . . Bpe13g00456 . Bma15g01028 . . . Cma07g00510 . Car07g00446 . . . . . . . . . . . . . . . . . . . . Cone3ag0624 . . . . . . . . . . . . . . Cmo07g00508 . . . Car05g00768 . . Bhi10g02053 Tan05g1355 . . Hepe10g1418 . . . . . . . . . . Csa04g00525 . Cme02g00859
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001085 0 3 0 0 0 3 0 3 3 3 3 3 6 1 4 6 3 1 0 3 3 2 3 8 9 3 3 2 2 0 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00525 Csa_Chr04 FPKM 20.448792 21.254135 25.001183 22.109859 17.872826 16.736914 17.840567 29.207247 30.317408 30.49646