Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00528 ATGATCATGGAATGTGTTCGATTAAGCCCTCAACTCTGTTTTAATCCTCAGAATGTTGTTTCCTCTGATGATTTTTTCGTCGACCAACTCTTGGATTTGTCTGATCATGATGAATTCCTTCAAGACCAAACCCCTGATGATGATGACGATGATGATAAACCTTCTGTTTCCCTTTCCAATCTTGTTTCTGCTCAGGAAATTCATCAGGACTCCATTGTTTCCGATTTTCCTTCTTTACCTACCAGTGAACTTACTGTTCCGGCGGATGATTTGGAGGACCTCGAATGGCTATCCCATTTTGTCGAGGATTCTTTCTCTGGATTCTCCGCTCCCTTTCCTTCTCCCATGAAATCGTCCAAGGAAATTGCAACCTCGGAGGAACAACTGGTGGAGGATGATGGTTCTGTTTCGCCTCCGGAGCCCTGTTTCAAAACCCCCATTCCGGCTAAGGCTAGAAGCAAACGGAGGAGAACCAGCGGTCGAGTTTGGTGCCTTCGTTCACCGTCGTTGACCGATTCTTCCTCTTGTTCCACAACGTCGTCCTCCTCTTCATCGCCGGCAAGTCCTTGGCTCATCATTTCCGACCGTTTCGAACCGGAAATTCCAGCCACGAAGAAAAGGAGGAGAAAATCTCCATCGGAGAAGTCCAGGATCACCATTGGAGCACAGCCGCCTCGACGGTGCAGTCATTGCGGAGTCCAGAAAACTCCTCAATGGAGAACCGGCCCCCTCGGAGCAAAAACCCTCTGCAACGCTTGCGGTGTTAGGTTTAAATCGGGTCGACTCTTACCCGAATATCGACCCGCATGCAGTCCGAATTTCTCCAGCGAATTGCACTCAAACCATCACCGTAAAGTACTTGAAATGCGCCGGAAAAAGGAAGTGACGGCCCCAGACGAGTTTTTGAGCGTAGAAAAAAATTAA 924 48.38 MIMECVRLSPQLCFNPQNVVSSDDFFVDQLLDLSDHDEFLQDQTPDDDDDDDKPSVSLSNLVSAQEIHQDSIVSDFPSLPTSELTVPADDLEDLEWLSHFVEDSFSGFSAPFPSPMKSSKEIATSEEQLVEDDGSVSPPEPCFKTPIPAKARSKRRRTSGRVWCLRSPSLTDSSSCSTTSSSSSSPASPWLIISDRFEPEIPATKKRRRKSPSEKSRITIGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPNFSSELHSNHHRKVLEMRRKKEVTAPDEFLSVEKN* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3481016 3482887 - CsaV3_4G005280.1 Csa04g00528 526138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00528 307 MobiDBLite consensus disorder prediction 116 154 - -
Csa04g00528 307 CDD ZnF_GATA 227 275 IPR000679 GO:0006355|GO:0043565
Csa04g00528 307 ProSitePatterns GATA-type zinc finger domain. 228 253 IPR000679 GO:0006355|GO:0043565
Csa04g00528 307 PANTHER GATA TRANSCRIPTION FACTOR 15 296 - -
Csa04g00528 307 Gene3D - 221 296 IPR013088 GO:0006355|GO:0008270
Csa04g00528 307 MobiDBLite consensus disorder prediction 39 60 - -
Csa04g00528 307 MobiDBLite consensus disorder prediction 168 187 - -
Csa04g00528 307 MobiDBLite consensus disorder prediction 201 231 - -
Csa04g00528 307 ProSiteProfiles GATA-type zinc finger domain profile. 222 258 IPR000679 GO:0006355|GO:0043565
Csa04g00528 307 Pfam GATA zinc finger 228 262 IPR000679 GO:0006355|GO:0043565
Csa04g00528 307 SMART GATA_3 222 276 IPR000679 GO:0006355|GO:0043565
Csa04g00528 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 284 - -
Csa04g00528 307 PIRSF Txn_fac_GATA_plant 3 306 IPR016679 GO:0003677|GO:0005634|GO:0045893
Csa04g00528 307 PANTHER GATA TRANSCRIPTION FACTOR 15 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04676 Csa-Chr3:40672546 Csa04g00528 Csa-Chr4:3481016 1.59E-07 dispersed
Csa04g00528 Csa-Chr4:3481016 Csa07g02450 Csa-Chr7:22371588 3.04E-46 dispersed
Csa06g03299 Csa-Chr6:27648371 Csa04g00528 Csa-Chr4:3481016 2.69E-60 transposed
Csa03g04025 Csa-Chr3:35144516 Csa04g00528 Csa-Chr4:3481016 1.17E-35 transposed
Csa02g01309 Csa-Chr2:12724631 Csa04g00528 Csa-Chr4:3481016 2.58E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31499 PF00320 GATA 3.80E-16 CL0167 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00528 - - csv:101221784 554.288