Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00528 ATGATCATGGAATGTGTTCGATTAAGCCCTCAACTCTGTTTTAATCCTCAGAATGTTGTTTCCTCTGATGATTTTTTCGTCGACCAACTCTTGGATTTGTCTGATCATGATGAATTCCTTCAAGACCAAACCCCTGATGATGATGACGATGATGATAAACCTTCTGTTTCCCTTTCCAATCTTGTTTCTGCTCAGGAAATTCATCAGGACTCCATTGTTTCCGATTTTCCTTCTTTACCTACCAGTGAACTTACTGTTCCGGCGGATGATTTGGAGGACCTCGAATGGCTATCCCATTTTGTCGAGGATTCTTTCTCTGGATTCTCCGCTCCCTTTCCTTCTCCCATGAAATCGTCCAAGGAAATTGCAACCTCGGAGGAACAACTGGTGGAGGATGATGGTTCTGTTTCGCCTCCGGAGCCCTGTTTCAAAACCCCCATTCCGGCTAAGGCTAGAAGCAAACGGAGGAGAACCAGCGGTCGAGTTTGGTGCCTTCGTTCACCGTCGTTGACCGATTCTTCCTCTTGTTCCACAACGTCGTCCTCCTCTTCATCGCCGGCAAGTCCTTGGCTCATCATTTCCGACCGTTTCGAACCGGAAATTCCAGCCACGAAGAAAAGGAGGAGAAAATCTCCATCGGAGAAGTCCAGGATCACCATTGGAGCACAGCCGCCTCGACGGTGCAGTCATTGCGGAGTCCAGAAAACTCCTCAATGGAGAACCGGCCCCCTCGGAGCAAAAACCCTCTGCAACGCTTGCGGTGTTAGGTTTAAATCGGGTCGACTCTTACCCGAATATCGACCCGCATGCAGTCCGAATTTCTCCAGCGAATTGCACTCAAACCATCACCGTAAAGTACTTGAAATGCGCCGGAAAAAGGAAGTGACGGCCCCAGACGAGTTTTTGAGCGTAGAAAAAAATTAA 924 48.38 MIMECVRLSPQLCFNPQNVVSSDDFFVDQLLDLSDHDEFLQDQTPDDDDDDDKPSVSLSNLVSAQEIHQDSIVSDFPSLPTSELTVPADDLEDLEWLSHFVEDSFSGFSAPFPSPMKSSKEIATSEEQLVEDDGSVSPPEPCFKTPIPAKARSKRRRTSGRVWCLRSPSLTDSSSCSTTSSSSSSPASPWLIISDRFEPEIPATKKRRRKSPSEKSRITIGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPNFSSELHSNHHRKVLEMRRKKEVTAPDEFLSVEKN* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3481016 3482887 - CsaV3_4G005280.1 Csa04g00528 526138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00528 307 MobiDBLite consensus disorder prediction 116 154 - -
Csa04g00528 307 CDD ZnF_GATA 227 275 IPR000679 GO:0006355|GO:0043565
Csa04g00528 307 ProSitePatterns GATA-type zinc finger domain. 228 253 IPR000679 GO:0006355|GO:0043565
Csa04g00528 307 PANTHER GATA TRANSCRIPTION FACTOR 15 296 - -
Csa04g00528 307 Gene3D - 221 296 IPR013088 GO:0006355|GO:0008270
Csa04g00528 307 MobiDBLite consensus disorder prediction 39 60 - -
Csa04g00528 307 MobiDBLite consensus disorder prediction 168 187 - -
Csa04g00528 307 MobiDBLite consensus disorder prediction 201 231 - -
Csa04g00528 307 ProSiteProfiles GATA-type zinc finger domain profile. 222 258 IPR000679 GO:0006355|GO:0043565
Csa04g00528 307 Pfam GATA zinc finger 228 262 IPR000679 GO:0006355|GO:0043565
Csa04g00528 307 SMART GATA_3 222 276 IPR000679 GO:0006355|GO:0043565
Csa04g00528 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 284 - -
Csa04g00528 307 PIRSF Txn_fac_GATA_plant 3 306 IPR016679 GO:0003677|GO:0005634|GO:0045893
Csa04g00528 307 PANTHER GATA TRANSCRIPTION FACTOR 15 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00528 - - - csv:101221784 554.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04676 Csa-Chr3:40672546 Csa04g00528 Csa-Chr4:3481016 1.59E-07 dispersed
Csa04g00528 Csa-Chr4:3481016 Csa07g02450 Csa-Chr7:22371588 3.04E-46 dispersed
Csa06g03299 Csa-Chr6:27648371 Csa04g00528 Csa-Chr4:3481016 2.69E-60 transposed
Csa03g04025 Csa-Chr3:35144516 Csa04g00528 Csa-Chr4:3481016 1.17E-35 transposed
Csa02g01309 Csa-Chr2:12724631 Csa04g00528 Csa-Chr4:3481016 2.58E-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02256 CCT,ECH 1 224 C2C2-Gata Transcription Factor Family AT5G25830 56.3 1.2e-59 227.3
Csa06g03299 . 86 257 C2C2-Gata Transcription Factor Family AT4G34680 50.3 6.6e-37 151.4
Csa02g02256 CCT,ECH 35 189 C2C2-Gata Transcription Factor Family AT3G60530 53.4 7.7e-37 151.0
Csa04g00528 . 17 300 C2C2-Gata Transcription Factor Family AT5G66320 51.7 1.3e-66 250.4
Csa04g00528 . 23 296 C2C2-Gata Transcription Factor Family AT3G51080 50.5 1.4e-54 210.3
Csa06g03299 . 95 256 C2C2-Gata Transcription Factor Family AT4G36240 53.5 1.7e-41 166.4
Csa02g02256 CCT,ECH 3 224 C2C2-Gata Transcription Factor Family AT4G32890 52.4 7.3e-48 188.0
Csa03g04676 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.5 2.0e-135 479.6
Csa03g00234 . 3 446 C2C2-Gata Transcription Factor Family AT4G17570 50.3 1.5e-101 367.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31499 PF00320 GATA 3.80E-16 CL0167 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00528 Csa_Chr04 FPKM 2.420091 0.0 0.0 0.0 0.0 0.0 1.05169 0.147866 0.0 0.0