Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00531 ATGTTCGGAATGTTGCCGCAGAGTCGAATGGCCGCTGGTGCGGCTTGTAAACGGGTGGGACAATTGGTGGCCAATTCAGGTTTACGAAGGCTTGGAGTTTCGAATGTGTCTTCATTTGAAAGCTCAATCTTCGACCATTCAGCAAATAATTTGTCGGCATCCATCTCCTTGATTTCTCGGTACAGACACTATGAATGTAGGCAGATCTCTCAGCTTGTGAAATCTAACGGAAAGCGATTGTTTCTAGTCGACACATTAGCCCTAGTTAGAAAATTGGAAGGTCAAGGGGTGCCCTCAAATCAAGCTGAGGCAATTACTGCTGCCATTACTGAAGTGCTAAATGACAGCTTGGAAAATATATCTCATTCATTTGTTTCAAAGGGGGAGATGCAGAAAATTGAAATGATCCAGGATTCAAATTTGTCAAAATTCAAATCTGAAGTTCAAAGTTCACAGGGGCACCATTTTTCTTTATTGGGACATGAGACTGAAAAACTCCGAAATGATATTGAGAAGATGCGCAGTGAGCTGAGGTATGAAATTGACAAAGTCACTGCTGGACAGCGATTAGACTTGAATCTTGAAAGAGGGAGGATTCGGGATGAGCTAGCTAATCAGAATGCTGAAACAACCAACCTAACTAACAAACTTGATCGGGAAATTCATGGTCTGAGGGCACAGCTAGAAGCTGCAAAATACGATGTAATAAAATACTGCATTGGAACGCTCGTTTCCATTTCTGCTGTTGGTCTGGCTGTACTTCGCATCTTAATGTAA 777 42.21 MFGMLPQSRMAAGAACKRVGQLVANSGLRRLGVSNVSSFESSIFDHSANNLSASISLISRYRHYECRQISQLVKSNGKRLFLVDTLALVRKLEGQGVPSNQAEAITAAITEVLNDSLENISHSFVSKGEMQKIEMIQDSNLSKFKSEVQSSQGHHFSLLGHETEKLRNDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNLTNKLDREIHGLRAQLEAAKYDVIKYCIGTLVSISAVGLAVLRILM* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3494715 3498678 - CsaV3_4G005310.1 Csa04g00531 526141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00531 258 Pfam Coiled-coil domain-containing protein 90-like 83 257 IPR024461 -
Csa04g00531 258 Coils Coil 200 220 - -
Csa04g00531 258 PANTHER FMP32-LIKE PROTEIN 14 258 - -
Csa04g00531 258 PANTHER UNCHARACTERIZED 14 258 IPR024461 -
Csa04g00531 258 Gene3D - 84 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00531 - - - csv:101222017 494.967
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1075 . Blo16g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00531 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002946 1 0 2 2 2 1 2 1 1 1 0 1 2 1 1 2 1 3 2 1 1 1 2 2 2 1 2 3 8 3 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00531 Csa_Chr04 FPKM 11.623578 10.942306 13.667761 12.454199 8.440859 7.524831 9.318048 12.246839 11.405145 14.619126