Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00532 ATGTTCCGCCCTCTCGTTTCCACTTCTTCTTCTTCACCCATGCACATGACGTCCTTCTTGGCTCCCACTCAGCGCTATGCCACCGGTGCATTGTTTGCACTTGCTCTTCATCAGGCTCAGATCCATCAGACGCGTCCTCTAGGCTTTTCCGACGATGACGCTCGTGCGGAGGAGCGAACCAGTAGTTGTAGCGGTAGTAGCTCTGATTCCGTCTCTGAAGACCCTGAGCTTTGGGTCCATGAATCCTCCGCCCTGCTTCGTCCTGTATTCAGGTTTTTAGAGATTGACTCTGCTGCTTGGTCTGGACTTGAGGAAACTGCAGGATCTGGTACAGCTAAGCATCACATTGGAGCATTCTTGCGGTTACTATCAGAGGACAATGAAAACTCTTCTGAGATGATAGAACAGGAACTTGCTCTATCTAAATCTGTTGATGCTATAGAAGAAAACATGGAGAAGAATATTATATCTTCTCAGTCTAAGGAAAAATATCGTGAATATGAAGATGAATGGCGAGAGAAGTGCTTGCCTGCCGAGGCAAAATCAAAATTTGAAGAATTTAACAAGCAAACAGAAAGCACTGATGGTAGTGTGGTTGTTAAACAGCCAGATGATGGGGCATGGAATGAGGCTATTGAGCAACCTATCGAAGAGGAAAAAATGCTTAGCCACCAAAGAAAAGTGGTCATTCTCTATGAGCTTCTATCTGCTTGTCTGGCAGACATAAGTGTAAACAAGAAACAAAGCCGCCAAAGAAAGGGTTATGATGCCCGGCACCGTTTGGCTTTGAGATTATTATCAACCTGGATTGATATCAAGTGGATGAAAATGGAAGCAATTGAGACAATGGTTGCTTGCTCAGCTATGGCTCTAGCTAAAAGCGTGGCAGAGATGGGAGAAGAAAGCCCTACAAAGGAGAGTAACTGGGATAAGTGGAAACGTGGTGGCATTATTGGTGCAGCTGCATTAACTGGAGGGACCTTGATGGCAATTACAGGAGGATTAGCTGCACCTGCCATTGCTGCTGGTTTCAGTGCTTTAGCTCCAACATTAGGTACCATCATCCCTGTCATTGGTGCAAGTGGATTTGCTGCAGCTGCCAGTGCTGCAGGGACTGTTGCCGGTTCTGTGGCTGTTGCTGCATCTTTTGGTGCTGCCGGAGCAGGACTTACAGGAACCAAAATGGCTAGGAGAATTGGGAGCGTTGATGAGTTTGAATTTAAAGCAATAGGAGAAAATCATAACCAAGGCAGATTAGCAGTTGAGATAACAGTGTCAGGTTTTGCCTTTGATGACAAAGATTTCGTAAGGCCATGGGAAGGACTTACTGATAACTTGGAAAGGTATGCACTGCAGTGGGAGTCTAAAAATATAATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAGACTTGCAATGGAGTTGATGAAGCGAGGTGCCATGATGACTGTTTTGAGCTCTCTCTTAGTAGCACTGGCTTGGCCAGCTACTTTACTTGCGGCTACTGATTTCATTGACAGCAAATGGACAATTGCTGTCGACAGATCAGATAAAGCTGGTCGAATACTGGCAGATGTGTTGTTAAAAGGTTTACAAGGGAACAGGCCTGTAACACTTGTGGGGTACTCGCTGGGTGCACGTGTAATATTCAAATGTCTCCAATATTTGGCGGAGACTGAAAAAAATGCTGAGCTTGTGGAAAAAGTTGTTCTTCTTGGAGCACCCATATCAATTAAAGATCAGAACTGGGAAGCTGCTAGAAAGATGGTAGCAGGAAGATTTGTGAACGTATACTCCACAAATGATTGGATGCTTGGAATTGCTTTTCGTGCCAGTCTACTTACTCAAGGGTTAGCTGGAATTCAACCTATCGACATCCCTGGCATTGAGAATGTTGATGTGACAGATGTGATCGAAGGTCACTCCTCGTATCTATGGGCTACTCGCCAAATCTTGGAGCAGCTTGAACTGGAAACCTATTATCCAGTTTTTAGAAGTAGTTCTGACAGGCAATAG 2022 45.0 MFRPLVSTSSSSPMHMTSFLAPTQRYATGALFALALHQAQIHQTRPLGFSDDDARAEERTSSCSGSSSDSVSEDPELWVHESSALLRPVFRFLEIDSAAWSGLEETAGSGTAKHHIGAFLRLLSEDNENSSEMIEQELALSKSVDAIEENMEKNIISSQSKEKYREYEDEWREKCLPAEAKSKFEEFNKQTESTDGSVVVKQPDDGAWNEAIEQPIEEEKMLSHQRKVVILYELLSACLADISVNKKQSRQRKGYDARHRLALRLLSTWIDIKWMKMEAIETMVACSAMALAKSVAEMGEESPTKESNWDKWKRGGIIGAAALTGGTLMAITGGLAAPAIAAGFSALAPTLGTIIPVIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGTKMARRIGSVDEFEFKAIGENHNQGRLAVEITVSGFAFDDKDFVRPWEGLTDNLERYALQWESKNIIAVSTAIQDWLTSRLAMELMKRGAMMTVLSSLLVALAWPATLLAATDFIDSKWTIAVDRSDKAGRILADVLLKGLQGNRPVTLVGYSLGARVIFKCLQYLAETEKNAELVEKVVLLGAPISIKDQNWEAARKMVAGRFVNVYSTNDWMLGIAFRASLLTQGLAGIQPIDIPGIENVDVTDVIEGHSSYLWATRQILEQLELETYYPVFRSSSDRQ* 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3500065 3507259 - CsaV3_4G005320.1 Csa04g00532 526142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00532 673 Pfam Protein of unknown function (DUF726) 311 659 IPR007941 -
Csa04g00532 673 SUPERFAMILY alpha/beta-Hydrolases 517 605 IPR029058 -
Csa04g00532 673 PANTHER TRANSMEMBRANE/COILED-COIL PROTEIN (DUF726) 16 668 - -
Csa04g00532 673 PANTHER TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4 16 668 IPR007941 -
Csa04g00532 673 MobiDBLite consensus disorder prediction 47 74 - -
Csa04g00532 673 Gene3D alpha/beta hydrolase 466 659 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00532 - - - csv:101222258 1220.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1076 Blo04g00897 . . . Bpe15g00416 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0836 Cone12ag0730 . . . . Chy07g01269 . . . . . . . Bma03g00972 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00532 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008264 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00532 Csa_Chr04 FPKM 50.6992 52.327274 42.212044 45.49152 38.297302 42.292957 47.739357 30.885107 31.157633 41.702507