Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00533 ATGGGGTGTCACATCCTCACCCAGTCCATTTCCAAGTGCCCTCTCGCCAGACCAGACCGACCACGCAAAAGCCTTCTTCCCCATTCCCCATTCCCCCCCACCCCCCTCTCCCTTCTCCACAACCATCAACTTAGGGTTGTCAACTCATCTTCCCCAATTCCCAATTCCCCAATTCCTCAATTCCCGATCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCCATGGACAAACCCCACGATCCCCCTCTCGATTTCTACAAACCCCGTCTTCAATCTCATGACCCTCACCCACCTCCTCCCCCTCTTTCCGCCAATTCTATTCCTCCTCCTCCTCTTCCTCCTCCTCCTGACCTTATGGACCTCGATCCTTCCTCAACTAACCCACGTGTCCATGATTCCCAGCTCCCTGATTCTAACCTTAATGCTCAATTGAAAGACAAAGTTGTTGTTGTTGTTGGGGCTCGTCGACGAGGTCGTCCTCCTCGTGCTCAACTTAATCTACCTCCGCCTCCCTTGAGACAGAAGAAGGATGAGGAGGATGTTTGTTTTATTTGCTTTGATGGTGGAAGCCTTGTTCTCTGTGATCGTCGAGGGTGCCCAAAGGCTTATCATCCATCATGCATTAAGCGAGATGAATCATTCTTTCGATCTAAGGCTAAATGGAATTGTGGATGGCACATATGCACAAGTTGCCAGAAGGCTTCCTATTATATGTGCTATACATGCCCCTTTTCTCTGTGCAAAGGATGTATTAAAGGTGCTGATTATCAGTGTGTTAGGGGAAGCAAAGGGTTCTGTGGAACTTGTATGAAAATAATAATGCTAATTGAGAAAAGGGCACCTGATGGAGAATCGGTTCAAGTTGATTTTGATGACAAAAGTAGCTGGGAGTATCTTTTTAAAGTGTATTGGATTTATTTGAAGGAGAAACTTTCTTTAACTGTGGATGAGCTAGTTCGAGCTAAAAATTCATGGCAAGGAAGCACTATCATGGACCATAAGGTGGGTCCTAATGAGCTTCTCAATGGCAGTATTGATAAAAGCCAAGGAGCTCATAATTCATATAGAAACCCAAAATCACAGAGGAAAAGGCCTAACAGGCAACAAGGGTCTCTGAATAAATTCAGTTCCTTGGTGGACAGGCCAAGTAGTAACGAGCAATTTTCTGGAAGCACAAAATGGGGAACTACAGAGCTCATGGACTTAGTTGCACATATGAGAAATGGTGATACAACCAGGCTTTCACCATTAGATGTACAAGCTTTACTGCTGGAATATGTGAAGAAAAATAATCTTCGTGATCCTCAACAGCAATCCCAAATTATTTGTGATTTCAGGCTTACCAATCTATTTGGGAAATCACGGATAGGTCACTTTGAGATGCTAAATCTTCTTCAGTCTCATGTACACGGAAAAGAAACTGCAGCTGATAATGTAACCAGCTCAGGAGCTGGTACAGTGATCAATCCAGTTGAAAGCAAAGAGAAGCATGATTCTGAATCAGTGGATGACTGTGAAAGAAAGCATAAAACAAACAAGAAAGCTGATGAGAGTAGGGAGCAATTACATGCTATTGCAGATGAATATGCTGCAATTGACGCTCAGAACATTAACTTGATTTACTTGCGGCGTGATTTGATAATGAGCCTAATTGATGATGAGAAAAAATTTAATGACATGGTCGTAGGCTCTATTGTGAGGATACAGATTCCAAATAATGATGAAAAGCATGATTTTCATAGGCTTGTCCAAGTTGTAGGCACAAGCAAGATCTCGACACCATACACAGTGGGTGAAAAAACAATTGATGCGATGCTTGATATATTAAACTTGGACAAGAGAGAGTCCGTGTCCATTGAGGGGATTTCTAACCAAGAATTTACTGAGGAAGAATGTAGGCGTCTACGCCGGAGCATAAAGTGTGGGCTTGTCAAACGATTCAGTGTTAGTGAAATTTTGGACAAGGGAAGGGAACTTCATGCATTGAAGATTAATGATATGCTCCAAAAAGAGATCTCTCGGCTCACTCAACTCCATGTTCAAGCAAGTGAGAAGGGCAACGTAGATGAATTAAGAGATGTTGCGGAGAGGTTACAACGTCTAAAGTCACCTGGTGAAGAACACCAACATAGGCTTCTTGAAATTCTCGAAGTACGATCTGATCCAACTATGGATCCAAGTTATGAGTCTGAAGAAGATAAGGATGAATCAAACAAGAAAAGACAAGGAAGTCTCAAGAGATCTAGAAATTGTGATTTTGATGACAAAGAGGTGGAGCTTACCTCACCGCGAAGAGGAACCAATTCAAATGTTTGTGGAATTGATGTACAGAAAAATTTGACTAGCACTTCAGAGCAAAGTAGAAATATTAGCTTAACTGCTCACGTAAATAAAGAAGAGGAATGCTTGCCCAGTGACAGGATTTGCGAAACATCGTTGGCTGGAAGAGGTCTTGTACCAAATAACTGGAATGTACCTAGCCAGGCTGAAACTGCCACTCCTGTGTCCTCTGATGGGAATTATCAAGTGGTCTTACCTGAAGCCTCAATTCCGCCACTTTCTATTGGGTTAGGAAGTTCGTCCAATGATGCAGAAGTGGAACGGATATGGCAATACCAGGATCCAACTGGAAAAGTTCAAGGTCCATTTTCTATGACGCAGTTACGCAATTGGAACAATAGTGGACACTTCACTCCTGATCTTAGAGTATGGAGGATAACAGAATCACAAAACGACTCTGTGCTGTTAACCAATGCATTAAATGGATGTTACAACAAAGCATCTTCCATTTGGCAGCCCAACAATCATCTTCTAAGTCTAGGGCGAGGAAGTGGGCTTTCTTTAGGTGGTTCAGATAATCATCATAATGGCCAAAGTAATGGAGTTACTGATTCTAGTACAAATTTTGTTCGGTTTGGTATTGATTCTACCAAGAATAGAAACTCTGAGCAGAAAGATCATATTGCAGTTTGTGATGCTGAAAATGAGCCCATGATGAGCACCGGTTCAAGTTCACCTTCTAAAGATTTTTGTGCTCCTGCAGATACCGTCAACTCTATTCAGTCTCCTAGGAATCTTGAGGTAGCACACGAACCGTTGAAGAACAGCAGTTCGTGGTCCTACCCATCCCTTATGAATTTACTTTCCTCTGCTACATTATCTTTACAACCGCCAGTGACTGAAGTCCATGAGGCCAAGGAAAACCACAGCCCCAATAATGAGGATCAGAATTCACAGACCATTAGTTTGGGAGGAATTCATAGTCAACCCGGTCGCAAGAAACGGTCTAATAGTGAAGATTGTTCTAGTCAATCTTCTGGACAAAACTGGATTGCTCCACCTGCAGCAGATGCTTCCTCTCGGGAATGGAACTCTAATTGTAGTGGTCTTTCTTTGATGGGTTCATTCAATCCTTCAGAGAAAATCCGAGAAATTTTACCCGATATTACTCTTCATTCTGCCCCAAAACCAATGACTGGAGATGTTGACATTAAACAATCTGCATCTTCAAGTGTTCTTGTTCAGAATTCTGGCCCTAGCTGGAGTAGTGCAGGTGGATGGGGGGATGGTTATATGGCTGCACCAGGTAGACCTATTGAGGACTTGAACTCGAGTTTTGGTCTGAAATCATCTGATATAATTGATGACCACGAAACAACTGGGGCTACAATAAATTGGGGGGCAATTGATGATGATTCCAACGACTTCAATTCCTTGGTTGATGAATCTGTCTCAGATTTGTTAGCAGAAGTCGAAGCAATGGAATGCTTGAGCGGTTTGGCTTCCTCAGCATCAATGATGAATTGTAGCGAGGGACTAACTCGGGACTCTAGAACTGATTGTTTCTTCTCGGTGGATGGTTTCAATCCAGCAGCTGAGATGGGGAAGGTGGATGCATTAAGCTCCACAGCCAATATGCAGTTTCCATATCACATCAGAGTGAAAGATGAGCAACCTTGA 3960 42.78 MGCHILTQSISKCPLARPDRPRKSLLPHSPFPPTPLSLLHNHQLRVVNSSSPIPNSPIPQFPIFLSFFLSFFLPMDKPHDPPLDFYKPRLQSHDPHPPPPPLSANSIPPPPLPPPPDLMDLDPSSTNPRVHDSQLPDSNLNAQLKDKVVVVVGARRRGRPPRAQLNLPPPPLRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPSCIKRDESFFRSKAKWNCGWHICTSCQKASYYMCYTCPFSLCKGCIKGADYQCVRGSKGFCGTCMKIIMLIEKRAPDGESVQVDFDDKSSWEYLFKVYWIYLKEKLSLTVDELVRAKNSWQGSTIMDHKVGPNELLNGSIDKSQGAHNSYRNPKSQRKRPNRQQGSLNKFSSLVDRPSSNEQFSGSTKWGTTELMDLVAHMRNGDTTRLSPLDVQALLLEYVKKNNLRDPQQQSQIICDFRLTNLFGKSRIGHFEMLNLLQSHVHGKETAADNVTSSGAGTVINPVESKEKHDSESVDDCERKHKTNKKADESREQLHAIADEYAAIDAQNINLIYLRRDLIMSLIDDEKKFNDMVVGSIVRIQIPNNDEKHDFHRLVQVVGTSKISTPYTVGEKTIDAMLDILNLDKRESVSIEGISNQEFTEEECRRLRRSIKCGLVKRFSVSEILDKGRELHALKINDMLQKEISRLTQLHVQASEKGNVDELRDVAERLQRLKSPGEEHQHRLLEILEVRSDPTMDPSYESEEDKDESNKKRQGSLKRSRNCDFDDKEVELTSPRRGTNSNVCGIDVQKNLTSTSEQSRNISLTAHVNKEEECLPSDRICETSLAGRGLVPNNWNVPSQAETATPVSSDGNYQVVLPEASIPPLSIGLGSSSNDAEVERIWQYQDPTGKVQGPFSMTQLRNWNNSGHFTPDLRVWRITESQNDSVLLTNALNGCYNKASSIWQPNNHLLSLGRGSGLSLGGSDNHHNGQSNGVTDSSTNFVRFGIDSTKNRNSEQKDHIAVCDAENEPMMSTGSSSPSKDFCAPADTVNSIQSPRNLEVAHEPLKNSSSWSYPSLMNLLSSATLSLQPPVTEVHEAKENHSPNNEDQNSQTISLGGIHSQPGRKKRSNSEDCSSQSSGQNWIAPPAADASSREWNSNCSGLSLMGSFNPSEKIREILPDITLHSAPKPMTGDVDIKQSASSSVLVQNSGPSWSSAGGWGDGYMAAPGRPIEDLNSSFGLKSSDIIDDHETTGATINWGAIDDDSNDFNSLVDESVSDLLAEVEAMECLSGLASSASMMNCSEGLTRDSRTDCFFSVDGFNPAAEMGKVDALSSTANMQFPYHIRVKDEQP* 1320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3507369 3516485 - CsaV3_4G005330.1 Csa04g00533 526143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00533 1319 Pfam Plus-3 domain 536 639 IPR004343 GO:0003677
Csa04g00533 1319 Coils Coil 665 685 - -
Csa04g00533 1319 SMART PHD_3 181 227 IPR001965 -
Csa04g00533 1319 MobiDBLite consensus disorder prediction 1100 1118 - -
Csa04g00533 1319 ProSitePatterns Zinc finger PHD-type signature. 182 242 IPR019786 -
Csa04g00533 1319 Gene3D - 869 927 IPR035445 -
Csa04g00533 1319 MobiDBLite consensus disorder prediction 993 1016 - -
Csa04g00533 1319 MobiDBLite consensus disorder prediction 701 762 - -
Csa04g00533 1319 SMART gyf_5 868 923 IPR003169 GO:0005515
Csa04g00533 1319 MobiDBLite consensus disorder prediction 476 516 - -
Csa04g00533 1319 CDD PHD5_NSD 181 226 - -
Csa04g00533 1319 Gene3D SWIB/MDM2 domain 382 479 IPR036885 -
Csa04g00533 1319 SUPERFAMILY SWIB/MDM2 domain 394 473 IPR036885 -
Csa04g00533 1319 ProSiteProfiles Plus3 domain profile. 531 664 IPR004343 GO:0003677
Csa04g00533 1319 SMART swib_2 408 474 IPR019835 -
Csa04g00533 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 269 IPR013083 -
Csa04g00533 1319 SMART rtf1 531 641 IPR004343 GO:0003677
Csa04g00533 1319 MobiDBLite consensus disorder prediction 342 356 - -
Csa04g00533 1319 MobiDBLite consensus disorder prediction 83 138 - -
Csa04g00533 1319 CDD SWIB-MDM2_like 411 469 - -
Csa04g00533 1319 MobiDBLite consensus disorder prediction 364 391 - -
Csa04g00533 1319 SUPERFAMILY GYF domain 865 922 IPR035445 -
Csa04g00533 1319 MobiDBLite consensus disorder prediction 1061 1118 - -
Csa04g00533 1319 Gene3D - 532 661 IPR036128 GO:0003677
Csa04g00533 1319 PANTHER UNCHARACTERIZED 135 1315 - -
Csa04g00533 1319 SUPERFAMILY FYVE/PHD zinc finger 177 232 IPR011011 -
Csa04g00533 1319 MobiDBLite consensus disorder prediction 341 391 - -
Csa04g00533 1319 MobiDBLite consensus disorder prediction 92 121 - -
Csa04g00533 1319 SUPERFAMILY Plus3-like 532 661 IPR036128 GO:0003677
Csa04g00533 1319 Pfam GYF domain 870 910 IPR003169 GO:0005515
Csa04g00533 1319 MobiDBLite consensus disorder prediction 491 516 - -
Csa04g00533 1319 MobiDBLite consensus disorder prediction 1072 1086 - -
Csa04g00533 1319 MobiDBLite consensus disorder prediction 701 764 - -
Csa04g00533 1319 Pfam SWIB/MDM2 domain 411 469 IPR003121 -
Csa04g00533 1319 ProSiteProfiles GYF domain profile. 867 921 IPR003169 GO:0005515
Csa04g00533 1319 PANTHER BNAC08G48800D PROTEIN 135 1315 - -
Csa04g00533 1319 ProSiteProfiles SWIB/MDM2 domain profile. 388 471 IPR003121 -
Csa04g00533 1319 MobiDBLite consensus disorder prediction 949 968 - -
Csa04g00533 1319 CDD GYF 867 924 IPR003169 GO:0005515
Csa04g00533 1319 MobiDBLite consensus disorder prediction 997 1016 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00533 - - - csv:101215854 2418.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00533 Csa-Chr4:3507369 Csa07g00034 Csa-Chr7:441994 0 dispersed
Csa04g00533 Csa-Chr4:3507369 Csa03g03331 Csa-Chr3:30240795 8.77E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1077 Blo04g00896 Blo16g00072 . . Bpe15g00463 Bpe13g00425 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1664 . . . Chy07g01268 . . . Bda11g01845 . . . Bma03g00971 Bma06g00105 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00533 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005786 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31500 PF03126 Plus-3 4.50E-20 No_clan Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00533 Csa_Chr04 FPKM 0.0 0.0 0.0 0.0 6.370916 13.314947 6.903585 0.0 0.0 0.0