Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00534 ATGAGTAGGCCGTTGATATTTAACCTTTTCTTTCTCCTCATCGCCATCATCCTCCCGGCCGCCGCCCAAAACTGGACGGCTGGTGGCGGCCGGGGAATGAGATCAACAGTGCAAGATGAATACTTCAAGTGGATAAGACATATGGGTTCTTTCAAGCACTCTCTTTTCCAAAACACTAAGAACAAGTTCAAGCCTTGTTTGACGTTGAAGGTTTCCAAGAACACCAAGGCTGGTGGTTTCCGCTCGCTTCAGAAGGCGGTGAACTCTTTGCCGATTATCAACCGGTGTCGGGTCCGTATCCATGTTGCTGCTGGAATCTACAGAGAGAAAGTTGAGATTCCAGCGACGATGAGTTACATATGGGTGGAAGGTGAAGGAGCGGAGAAGACAATCATTGAATGGGGCGACACGGCGGACCATATGGGAGAAAATGGCCGTCCTATGGGCACTTTTGCTTCTGCAACTTTTGCTGTTAATTCTCCATTCTTCATTGCTACTAACATCACCTTCAAGAACAAGGCGAGGCTTCCACCATCAGGAGCACTGGGAAAGCAAGCAGTTGCATTCAGAATATCAGGAGATGCAGCAGCATTTATAAGTTGTAGGTTTATCGGTGCACAAGACACATTATACGACCATATGGGGCGACACTACTTCAAGGATTGCTACATTGAAGGGTCAGTGGACTTCGTGTTCGGTGATGGCCTCTCCATCTATGATAGTTGCCATTTGCATGCCATCACCAACAGTTATGGTGCTCTCACGGCCCAAAAGAGGAATAGCATGCTCGAAGAAACTGGCTTCTCTTTCCTTCATTGTAAAGTTTCTGGCTCAGGCGCCTTGTATTTGGGTAGGGCATGGGGCAGCTTCTCTAGAGTTGTGTTTGCTTATACATTTATGGATAAAATCATCACTCCCACTGGTTGGTACAACTGGGGCGACAAAAATCGTGAATTGACTGTATTTTATGGACAATATCGATGCTCGGGACCAGGAGCTGATTATGGAGGAAGGGTTCCATGGTCTAGAGAACTCACTCAGTCAGAAGCCAACCCATTTCTTTCTCTTGATTTTATCAATGCAAACCAATGGCTTCCAAATTACCACACTCATCTCTCTCTTAAACCACATTGA 1134 46.38 MSRPLIFNLFFLLIAIILPAAAQNWTAGGGRGMRSTVQDEYFKWIRHMGSFKHSLFQNTKNKFKPCLTLKVSKNTKAGGFRSLQKAVNSLPIINRCRVRIHVAAGIYREKVEIPATMSYIWVEGEGAEKTIIEWGDTADHMGENGRPMGTFASATFAVNSPFFIATNITFKNKARLPPSGALGKQAVAFRISGDAAAFISCRFIGAQDTLYDHMGRHYFKDCYIEGSVDFVFGDGLSIYDSCHLHAITNSYGALTAQKRNSMLEETGFSFLHCKVSGSGALYLGRAWGSFSRVVFAYTFMDKIITPTGWYNWGDKNRELTVFYGQYRCSGPGADYGGRVPWSRELTQSEANPFLSLDFINANQWLPNYHTHLSLKPH* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3525509 3528884 - CsaV3_4G005340.1 Csa04g00534 526144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00534 377 PANTHER PECTINESTERASE 30 366 - -
Csa04g00534 377 Gene3D - 67 374 IPR012334 -
Csa04g00534 377 Pfam Pectinesterase 76 361 IPR000070 GO:0030599|GO:0042545
Csa04g00534 377 SUPERFAMILY Pectin lyase-like 68 373 IPR011050 -
Csa04g00534 377 ProSitePatterns Pectinesterase signature 2. 224 233 IPR033131 -
Csa04g00534 377 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 30 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00534 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101222494 766.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02872 Csa-Chr1:25242995 Csa04g00534 Csa-Chr4:3525509 7.46E-170 dispersed
Csa04g00534 Csa-Chr4:3525509 Csa07g01935 Csa-Chr7:19147648 4.06E-101 dispersed
Csa04g00534 Csa-Chr4:3525509 Csa02g02065 Csa-Chr2:18904116 6.74E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00534 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014252 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00534 Csa_Chr04 FPKM 19.66818 21.199385 378.867859 365.030609 2052.202393 2287.442871 2011.019897 141.936844 160.11113 131.999863