Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g00536 | ATGGCCGGTTTTTTCCCACTAGACGGCGGCGGAAGCGGCGGAAGAGTACCCAATTATCATTTTCCCACTCCAACCACCGGCGGCGAAATTATTCATCCAACAACCGAGGGGTTATTTTGGTACAAGAATTATGAGAGATTGGAAACATGGGAAGGAGAAGAACAGCAACAGCAGCAGCAACCGGCGCAAGAACAAGGGGGAGAAGGGTTTGTTTACTCCGGCGATGAATCGCCGGCAAGATCGTCGTTGGTGATGGTGAGATCGGGGAGAGGCGGGGGCGGTGGAGGAGGGCCGGTAACGAGTTGCCAAGACTGTGGAAATCAAGCCAAAAAAGATTGTGTTCACATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTGAGTGTGAAACCCACGTGAAAAGCACGTGGGTTCCTGCCTCTAAACGCCGTGACCGCCACCTCCGTTCCGACGGCCTTAACTCCAAACGCCCTAAGGACACCCACTACCACCCCACTTCTTCAGGGTTGGACATGGGGAATTTTCCGACGGAAGTGACCACACCGGCAGTGTTTCGGTGTGTACGAATGACAAGCTTGGACGAAACCGACGACCAATATGCGTATCAAACAGCTGTCAATATCGGAGGCCGTATTTTTAAAGGCATTCTTTACGATCACGGCCCTGAACAACCACCTCCCCCTCCCTCCTCCTCCTCCGCCGCATTGCTCGATCCAACTCCGCCCTACCCGACTCCTCTCTCCACCTATATCACCGCCGGTACGCAATTTTTTCTTCCTCCATCATCTTAG | 792 | 53.03 | MAGFFPLDGGGSGGRVPNYHFPTPTTGGEIIHPTTEGLFWYKNYERLETWEGEEQQQQQQPAQEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGGGPVTSCQDCGNQAKKDCVHMRCRTCCKSRGFECETHVKSTWVPASKRRDRHLRSDGLNSKRPKDTHYHPTSSGLDMGNFPTEVTTPAVFRCVRMTSLDETDDQYAYQTAVNIGGRIFKGILYDHGPEQPPPPPSSSSAALLDPTPPYPTPLSTYITAGTQFFLPPSS* | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3546817 | 3548256 | + | CsaV3_4G005360.1 | Csa04g00536 | 526146 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g00536 | 263 | MobiDBLite | consensus disorder prediction | 217 | 243 | - | - | |
Csa04g00536 | 263 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 101 | 143 | IPR006510 | - | |
Csa04g00536 | 263 | Pfam | Domain of unknown function (DUF702) | 100 | 223 | - | - | |
Csa04g00536 | 263 | MobiDBLite | consensus disorder prediction | 221 | 243 | - | - | |
Csa04g00536 | 263 | PANTHER | PROTEIN SHORT INTERNODES | 1 | 224 | - | - | |
Csa04g00536 | 263 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 224 | IPR007818 | GO:0003700|GO:0006355 | |
Csa04g00536 | 263 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Csa04g00536 | 263 | MobiDBLite | consensus disorder prediction | 140 | 175 | - | - | |
Csa04g00536 | 263 | MobiDBLite | consensus disorder prediction | 51 | 79 | - | - | |
Csa04g00536 | 263 | MobiDBLite | consensus disorder prediction | 140 | 164 | - | - | |
Csa04g00536 | 263 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 175 | 222 | IPR006511 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g00536 | Csa-Chr4:3546817 | Csa07g00507 | Csa-Chr7:3658819 | 6.86E-47 | dispersed | |
Csa03g04251 | Csa-Chr3:37243313 | Csa04g00536 | Csa-Chr4:3546817 | 5.90E-51 | wgd | |
Csa04g00536 | Csa-Chr4:3546817 | Csa06g03294 | Csa-Chr6:27622500 | 3.10E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31501 | PF05142 | DUF702 | 9.30E-52 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g00536 | - | - | csv:101216097 | 479.559 |