Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00536 ATGGCCGGTTTTTTCCCACTAGACGGCGGCGGAAGCGGCGGAAGAGTACCCAATTATCATTTTCCCACTCCAACCACCGGCGGCGAAATTATTCATCCAACAACCGAGGGGTTATTTTGGTACAAGAATTATGAGAGATTGGAAACATGGGAAGGAGAAGAACAGCAACAGCAGCAGCAACCGGCGCAAGAACAAGGGGGAGAAGGGTTTGTTTACTCCGGCGATGAATCGCCGGCAAGATCGTCGTTGGTGATGGTGAGATCGGGGAGAGGCGGGGGCGGTGGAGGAGGGCCGGTAACGAGTTGCCAAGACTGTGGAAATCAAGCCAAAAAAGATTGTGTTCACATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTGAGTGTGAAACCCACGTGAAAAGCACGTGGGTTCCTGCCTCTAAACGCCGTGACCGCCACCTCCGTTCCGACGGCCTTAACTCCAAACGCCCTAAGGACACCCACTACCACCCCACTTCTTCAGGGTTGGACATGGGGAATTTTCCGACGGAAGTGACCACACCGGCAGTGTTTCGGTGTGTACGAATGACAAGCTTGGACGAAACCGACGACCAATATGCGTATCAAACAGCTGTCAATATCGGAGGCCGTATTTTTAAAGGCATTCTTTACGATCACGGCCCTGAACAACCACCTCCCCCTCCCTCCTCCTCCTCCGCCGCATTGCTCGATCCAACTCCGCCCTACCCGACTCCTCTCTCCACCTATATCACCGCCGGTACGCAATTTTTTCTTCCTCCATCATCTTAG 792 53.03 MAGFFPLDGGGSGGRVPNYHFPTPTTGGEIIHPTTEGLFWYKNYERLETWEGEEQQQQQQPAQEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGGGPVTSCQDCGNQAKKDCVHMRCRTCCKSRGFECETHVKSTWVPASKRRDRHLRSDGLNSKRPKDTHYHPTSSGLDMGNFPTEVTTPAVFRCVRMTSLDETDDQYAYQTAVNIGGRIFKGILYDHGPEQPPPPPSSSSAALLDPTPPYPTPLSTYITAGTQFFLPPSS* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3546817 3548256 + CsaV3_4G005360.1 Csa04g00536 526146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00536 263 MobiDBLite consensus disorder prediction 217 243 - -
Csa04g00536 263 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 101 143 IPR006510 -
Csa04g00536 263 Pfam Domain of unknown function (DUF702) 100 223 - -
Csa04g00536 263 MobiDBLite consensus disorder prediction 221 243 - -
Csa04g00536 263 PANTHER PROTEIN SHORT INTERNODES 1 224 - -
Csa04g00536 263 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 224 IPR007818 GO:0003700|GO:0006355
Csa04g00536 263 MobiDBLite consensus disorder prediction 1 32 - -
Csa04g00536 263 MobiDBLite consensus disorder prediction 140 175 - -
Csa04g00536 263 MobiDBLite consensus disorder prediction 51 79 - -
Csa04g00536 263 MobiDBLite consensus disorder prediction 140 164 - -
Csa04g00536 263 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 175 222 IPR006511 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00536 Csa-Chr4:3546817 Csa07g00507 Csa-Chr7:3658819 6.86E-47 dispersed
Csa03g04251 Csa-Chr3:37243313 Csa04g00536 Csa-Chr4:3546817 5.90E-51 wgd
Csa04g00536 Csa-Chr4:3546817 Csa06g03294 Csa-Chr6:27622500 3.10E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31501 PF05142 DUF702 9.30E-52 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00536 - - csv:101216097 479.559