Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00538 ATGAGTTTGGAAATGGAATCAAGTAAGGATCCTGAGAATCAGCTCATGATTGAAGGAAATATTGCTCAGAATATGAAGATCGATCCGGAGAGAGCTCGGTTTCCATGTTGCATTGTGTGGACACCTCTTCCTGTTATTTCTTGGCTTGTTCCTTTCATTGGTCACATTGGTATTGGTAGAGAGGATGGAGTAATCTTGGACTTTGCTGGCCCCAATTTTGTTTGTGTGGACAACTTCACATTTGGAGCTGTCGCACGGTATCTTCAAATCAACAGAGATAAGTGTTGCATTTCGGCTCATAGAAGTGAAGAAGAATTGAGGGAAGTTGATCATAGCAGAGAAATTTCAACATGGGATGATGCATTGCGGAGGAGCACTCAAGAGTTCCAACACCGAGCCTACAATCTCTTGACATGCAATTGTCATTCCTTTGTGGCTAATAATCTGAACAGACTTGGCTTTCGCACAGGTGGATGGAATGTGGTGAACCTTGCAGCTCTGATCTTTCTCAAGGGTCGGTGGGTCAGTAAAGGAGCTGTTATCCGAACGTTCTTACCATTTGTTGTGGTTTTCAGTATTGGACTCGCATTGGGGGATACTACGTTTCTTACCTTCTTGGCATTCTTCACTTTCTTCTTGGTTGGTTGGTTCATTCTCGGTACTTACGTCTTCAAAAATTTGGTTCAGTTGTAA 693 42.86 MSLEMESSKDPENQLMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVARYLQINRDKCCISAHRSEEELREVDHSREISTWDDALRRSTQEFQHRAYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTFLPFVVVFSIGLALGDTTFLTFLAFFTFFLVGWFILGTYVFKNLVQL* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3567897 3571088 + CsaV3_4G005380.1 Csa04g00538 526148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00538 230 PANTHER UNCHARACTERIZED 3 230 IPR008496 -
Csa04g00538 230 Pfam Protein of unknown function (DUF778) 99 174 IPR008496 -
Csa04g00538 230 Pfam Protein of unknown function (DUF778) 43 94 IPR008496 -
Csa04g00538 230 PANTHER - 3 230 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00538 K20726 TMEM222; transmembrane protein 222 - csv:101222733 462.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00538 Csa-Chr4:3567897 Csa04g02532 Csa-Chr4:25052682 3.04E-80 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1059 . . . . . . . . . Cmo16g00696 . . . . . . . . . . . . . . . . . . . . . Cone8ag0831 . . . . . Chy07g01264 . . . . . . . . . . . . Cma16g00639 . . . . Cpe14g00545 . . . . . . . Cla07g00837 Cam07g0906 Cec07g0959 Cco07g0949 Clacu07g0881 Cmu07g0881 Cre07g1242 Lsi07g00232 Csa04g00538 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011038 1 2 0 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00538 Csa_Chr04 FPKM 21.842283 25.929136 19.349707 18.70809 21.953724 24.05468 24.357435 22.032013 21.932661 20.625328