Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00543 ATGGCTCAATCTATGAGCTCTTTTATTGTATTTGCTTTTCTTGGCTTGGCTTCGGTTACTTTCTCTCACAAGATTGGCGGTGGCAGCTATGGTGGCAATGGCGGTGGCGGCTACTATTTGTATCCTCAGTTTTATGACCATTCATGTCCAAGAGCTCAAGAGATAGTGAAATACGTAGTGGCTAAGGCTTTTGCAAAGGAAGCTCGTATTGCTGCTTCTTTGCTTAGGCTTCATTTCCATGATTGTTTTGTTAAGGGTTGTGATGGTTCAATATTGTTAGATAGCAGTGGGACACTAGCTAGTGAGAAAAGATCAAATCCAAACAGAAACTCTGCTAGAGGATTTGAAGTGATTGATGAGATCAAATCTGCTTTGGAGAAAGAATGTCCTCAAACTGTTTCTTGTGCTGATATTTTGGCCATTGCTGCCAGAGACTCCACTGTCATTACTGGAGGACCAAGCTGGGAAGTTCCATTAGGAAGAAGGGATTCAAGAGGAGCAAGTCTAAGTGGCTCTAATAATGACATTCCTGCTCCTAACAACACTTTCCAAACCATTCTCACCAAGTTCAAGAGACAAGGCCTTGACATAGTTGATCTTGTTGCTCTTTCAGGTAGCCACACCATTGGAAACTCCCGATGCACTAGCTTCAGGCAACGTCTTTACAACCAATCTGGCAATGCCCAGCCTGATCCCTCTCTCGATCCATCATACGCTGCCGAGTTGCGGAAACGATGCCCGAGATCAGGTGGTGACCAGAACCTGTTCTTCCTGGACTTTGTGAGCCCCATCAAGTTTGACAACTACTACTTTAAGAATCTTTTAGCTGCAAAGGGTTTGCTGAACTCAGATGAAGTTCTGTTGACAAAGAACTTGCAATCAGCAGAATTGGTGAAAACATATGCAGAGAATTCTGAGTTGTTTTTTGAGCAATTTGCAAAGTCTATGGTGAAGATGGGAAACATTACTCCTCTAACTGGCTCAAGAGGAGAGATCAGAAAGAACTGCAGGAAAGTTAATAGAAAATAG 1029 43.05 MAQSMSSFIVFAFLGLASVTFSHKIGGGSYGGNGGGGYYLYPQFYDHSCPRAQEIVKYVVAKAFAKEARIAASLLRLHFHDCFVKGCDGSILLDSSGTLASEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILAIAARDSTVITGGPSWEVPLGRRDSRGASLSGSNNDIPAPNNTFQTILTKFKRQGLDIVDLVALSGSHTIGNSRCTSFRQRLYNQSGNAQPDPSLDPSYAAELRKRCPRSGGDQNLFFLDFVSPIKFDNYYFKNLLAAKGLLNSDEVLLTKNLQSAELVKTYAENSELFFEQFAKSMVKMGNITPLTGSRGEIRKNCRKVNRK* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3606838 3609858 - CsaV3_4G005430.1 Csa04g00543 526153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00543 342 PRINTS Haem peroxidase superfamily signature 71 85 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PRINTS Haem peroxidase superfamily signature 133 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PRINTS Haem peroxidase superfamily signature 151 163 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PRINTS Haem peroxidase superfamily signature 199 214 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PRINTS Haem peroxidase superfamily signature 259 274 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PANTHER PEROXIDASE 72-RELATED 7 340 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 Gene3D Peroxidase, domain 2 177 319 - -
Csa04g00543 342 PRINTS Plant peroxidase signature 49 68 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PRINTS Plant peroxidase signature 73 93 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PRINTS Plant peroxidase signature 113 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PRINTS Plant peroxidase signature 132 142 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PRINTS Plant peroxidase signature 151 166 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PRINTS Plant peroxidase signature 198 210 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PRINTS Plant peroxidase signature 257 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PRINTS Plant peroxidase signature 273 290 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PRINTS Plant peroxidase signature 314 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 ProSitePatterns Peroxidases active site signature. 71 82 IPR019794 GO:0004601
Csa04g00543 342 ProSitePatterns Peroxidases proximal heme-ligand signature. 199 209 IPR019793 -
Csa04g00543 342 Gene3D - 44 340 - -
Csa04g00543 342 ProSiteProfiles Plant heme peroxidase family profile. 39 340 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 SUPERFAMILY Heme-dependent peroxidases 40 340 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 CDD secretory_peroxidase 42 339 IPR033905 GO:0004601|GO:0042744
Csa04g00543 342 Pfam Peroxidase 57 304 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g00543 342 PANTHER PEROXIDASE 7 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00461 Csa-Chr4:2879585 Csa04g00543 Csa-Chr4:3606838 1.45E-79 dispersed
Csa04g00543 Csa-Chr4:3606838 Csa06g00217 Csa-Chr6:1493533 1.54E-112 dispersed
Csa06g02555 Csa-Chr6:22639940 Csa04g00543 Csa-Chr4:3606838 1.91E-32 dispersed
Csa03g04641 Csa-Chr3:40327967 Csa04g00543 Csa-Chr4:3606838 6.78E-75 transposed
Csa06g01861 Csa-Chr6:16783402 Csa04g00543 Csa-Chr4:3606838 3.78E-53 transposed
Csa07g00473 Csa-Chr7:3441475 Csa04g00543 Csa-Chr4:3606838 1.82E-103 transposed
Csa07g01199 Csa-Chr7:11789238 Csa04g00543 Csa-Chr4:3606838 8.60E-74 transposed
Csa04g00543 Csa-Chr4:3606838 Csa06g03285 Csa-Chr6:27565675 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00543 K00430 - csv:101223204 662.144