Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g00543 | ATGGCTCAATCTATGAGCTCTTTTATTGTATTTGCTTTTCTTGGCTTGGCTTCGGTTACTTTCTCTCACAAGATTGGCGGTGGCAGCTATGGTGGCAATGGCGGTGGCGGCTACTATTTGTATCCTCAGTTTTATGACCATTCATGTCCAAGAGCTCAAGAGATAGTGAAATACGTAGTGGCTAAGGCTTTTGCAAAGGAAGCTCGTATTGCTGCTTCTTTGCTTAGGCTTCATTTCCATGATTGTTTTGTTAAGGGTTGTGATGGTTCAATATTGTTAGATAGCAGTGGGACACTAGCTAGTGAGAAAAGATCAAATCCAAACAGAAACTCTGCTAGAGGATTTGAAGTGATTGATGAGATCAAATCTGCTTTGGAGAAAGAATGTCCTCAAACTGTTTCTTGTGCTGATATTTTGGCCATTGCTGCCAGAGACTCCACTGTCATTACTGGAGGACCAAGCTGGGAAGTTCCATTAGGAAGAAGGGATTCAAGAGGAGCAAGTCTAAGTGGCTCTAATAATGACATTCCTGCTCCTAACAACACTTTCCAAACCATTCTCACCAAGTTCAAGAGACAAGGCCTTGACATAGTTGATCTTGTTGCTCTTTCAGGTAGCCACACCATTGGAAACTCCCGATGCACTAGCTTCAGGCAACGTCTTTACAACCAATCTGGCAATGCCCAGCCTGATCCCTCTCTCGATCCATCATACGCTGCCGAGTTGCGGAAACGATGCCCGAGATCAGGTGGTGACCAGAACCTGTTCTTCCTGGACTTTGTGAGCCCCATCAAGTTTGACAACTACTACTTTAAGAATCTTTTAGCTGCAAAGGGTTTGCTGAACTCAGATGAAGTTCTGTTGACAAAGAACTTGCAATCAGCAGAATTGGTGAAAACATATGCAGAGAATTCTGAGTTGTTTTTTGAGCAATTTGCAAAGTCTATGGTGAAGATGGGAAACATTACTCCTCTAACTGGCTCAAGAGGAGAGATCAGAAAGAACTGCAGGAAAGTTAATAGAAAATAG | 1029 | 43.05 | MAQSMSSFIVFAFLGLASVTFSHKIGGGSYGGNGGGGYYLYPQFYDHSCPRAQEIVKYVVAKAFAKEARIAASLLRLHFHDCFVKGCDGSILLDSSGTLASEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILAIAARDSTVITGGPSWEVPLGRRDSRGASLSGSNNDIPAPNNTFQTILTKFKRQGLDIVDLVALSGSHTIGNSRCTSFRQRLYNQSGNAQPDPSLDPSYAAELRKRCPRSGGDQNLFFLDFVSPIKFDNYYFKNLLAAKGLLNSDEVLLTKNLQSAELVKTYAENSELFFEQFAKSMVKMGNITPLTGSRGEIRKNCRKVNRK* | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3606838 | 3609858 | - | CsaV3_4G005430.1 | Csa04g00543 | 526153 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g00543 | 342 | PRINTS | Haem peroxidase superfamily signature | 71 | 85 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PRINTS | Haem peroxidase superfamily signature | 133 | 150 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PRINTS | Haem peroxidase superfamily signature | 151 | 163 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PRINTS | Haem peroxidase superfamily signature | 199 | 214 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PRINTS | Haem peroxidase superfamily signature | 259 | 274 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PANTHER | PEROXIDASE 72-RELATED | 7 | 340 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | Gene3D | Peroxidase, domain 2 | 177 | 319 | - | - | |
Csa04g00543 | 342 | PRINTS | Plant peroxidase signature | 49 | 68 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PRINTS | Plant peroxidase signature | 73 | 93 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PRINTS | Plant peroxidase signature | 113 | 126 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PRINTS | Plant peroxidase signature | 132 | 142 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PRINTS | Plant peroxidase signature | 151 | 166 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PRINTS | Plant peroxidase signature | 198 | 210 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PRINTS | Plant peroxidase signature | 257 | 272 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PRINTS | Plant peroxidase signature | 273 | 290 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PRINTS | Plant peroxidase signature | 314 | 327 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | ProSitePatterns | Peroxidases active site signature. | 71 | 82 | IPR019794 | GO:0004601 | |
Csa04g00543 | 342 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 199 | 209 | IPR019793 | - | |
Csa04g00543 | 342 | Gene3D | - | 44 | 340 | - | - | |
Csa04g00543 | 342 | ProSiteProfiles | Plant heme peroxidase family profile. | 39 | 340 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | SUPERFAMILY | Heme-dependent peroxidases | 40 | 340 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | CDD | secretory_peroxidase | 42 | 339 | IPR033905 | GO:0004601|GO:0042744 | |
Csa04g00543 | 342 | Pfam | Peroxidase | 57 | 304 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g00543 | 342 | PANTHER | PEROXIDASE | 7 | 340 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g00461 | Csa-Chr4:2879585 | Csa04g00543 | Csa-Chr4:3606838 | 1.45E-79 | dispersed | |
Csa04g00543 | Csa-Chr4:3606838 | Csa06g00217 | Csa-Chr6:1493533 | 1.54E-112 | dispersed | |
Csa06g02555 | Csa-Chr6:22639940 | Csa04g00543 | Csa-Chr4:3606838 | 1.91E-32 | dispersed | |
Csa03g04641 | Csa-Chr3:40327967 | Csa04g00543 | Csa-Chr4:3606838 | 6.78E-75 | transposed | |
Csa06g01861 | Csa-Chr6:16783402 | Csa04g00543 | Csa-Chr4:3606838 | 3.78E-53 | transposed | |
Csa07g00473 | Csa-Chr7:3441475 | Csa04g00543 | Csa-Chr4:3606838 | 1.82E-103 | transposed | |
Csa07g01199 | Csa-Chr7:11789238 | Csa04g00543 | Csa-Chr4:3606838 | 8.60E-74 | transposed | |
Csa04g00543 | Csa-Chr4:3606838 | Csa06g03285 | Csa-Chr6:27565675 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g00543 | K00430 | - | csv:101223204 | 662.144 |