Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00548 ATGGCTACGTTTGTGGAGCCACCGAGCGGAATCAGATCGATGGGGAAGCATTATTATACAATGTGGCAAACTCTGTTTGAAGTTGATACTAAATATGTCCCGATCAAGCCGATTGGGCGAGGTGCTTATGGTGTAGTGTGTTCTTCGATTAACCGAGAGACTAACGAGAAAGTGGCGATCAAGAAAATTCATAATGTGTTTGAGAATCGTACGGACGCCATGAGAACACTGAGGGAGCTGAAGCTATTGAGGCACATACGGCATGAGAATGTGATTGCTTTGAAAGATGTGATGATGCCAATTCATAGGAAAAGCTTTAAAGATGTTTATTTGGTTTATGAACTCATGGATACAGATCTTCATCAGATTATCAAGTCCCCTCAGCCACTTTCCCATGATCATTGCAAGTACTTTATCTATCAGTTGCTTTGCGGGTTGCAGCATCTTCATTCAGCTAACATTCTTCACCGGGACTTGAAGCCTGGGAACCTCCTTGTCAATGCTAACTGTGATCTTAAGATATGCGATTTTGGGTTGGCACGAACTAGCATGGGCCGTGATCAGTTCATGACTGAGTATGTTGTTACTCGCTGGTATCGGGCTCCAGAACTTCTTCTCTGCTGTGACAACTATGGGACTTCTATTGATGTATGGTCTGTGGGATGCATCTTTGCTGAGATTCTTGGTCGGCAACCTATCTTCCCAGGGACAGAGTGCCTTAACCAACTTAACTTAATTATCACCATTCTTGGTAGTCCAAAGGAAGCAGATGTTGAGTTCATCGACAATGTAAAGGCCAGAAATTATATTAAGTCAATGCCCTTCTCAAGGGGAATACGCCTTTCTCATCTTTACCCACAAGCTGAACCTTTAGCTATAGACTTGTTACAGAAGATGCTTGTGTTTGATCCAACTAAGAGAATTACTGTTGACGAAGCACTTCAACATCCATACATGTCGGGGCTATACGATCCGAAGTTCAATTCTTCTGTTGAGGTTCCTCTCAATCTCGACATTGACGACACACTTGGGGAGCCTAAGATCAGGGAAATGATGTTGAATGAGATGCTGTATTACCATCCTGAAGCTGTTTCAACATTTTCTTAA 1107 42.82 MATFVEPPSGIRSMGKHYYTMWQTLFEVDTKYVPIKPIGRGAYGVVCSSINRETNEKVAIKKIHNVFENRTDAMRTLRELKLLRHIRHENVIALKDVMMPIHRKSFKDVYLVYELMDTDLHQIIKSPQPLSHDHCKYFIYQLLCGLQHLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSMGRDQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRQPIFPGTECLNQLNLIITILGSPKEADVEFIDNVKARNYIKSMPFSRGIRLSHLYPQAEPLAIDLLQKMLVFDPTKRITVDEALQHPYMSGLYDPKFNSSVEVPLNLDIDDTLGEPKIREMMLNEMLYYHPEAVSTFS* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3646885 3649776 - CsaV3_4G005480.1 Csa04g00548 526158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00548 368 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Csa04g00548 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Csa04g00548 368 SUPERFAMILY Protein kinase-like (PK-like) 24 325 IPR011009 -
Csa04g00548 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Csa04g00548 368 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00548 368 Gene3D Phosphorylase Kinase; domain 1 19 115 - -
Csa04g00548 368 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Csa04g00548 368 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Csa04g00548 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Csa04g00548 368 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00548 368 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02080 Csa-Chr2:18979563 Csa04g00548 Csa-Chr4:3646885 4.14E-89 dispersed
Csa02g02081 Csa-Chr2:18981944 Csa04g00548 Csa-Chr4:3646885 7.69E-130 dispersed
Csa04g00548 Csa-Chr4:3646885 Csa06g00083 Csa-Chr6:532725 2.28E-143 dispersed
Csa04g00548 Csa-Chr4:3646885 Csa05g00251 Csa-Chr5:1523550 1.57E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78120 PF00069 Pkinase 2.20E-71 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00548 K20537 - csv:101203896 757.288