Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00550 ATGTTATCCTTCTTTGGGGCAAGAAGAAACCCAATAACACTTGGGGCCTTGTTACAGAAAAAAAGCCCGAAGTTTCATGTCTTTGCCTTTCAAAACGGCACCGTATCGGTGTTTATCTACACTGCCAGGCTGATTCCGCTATCATCAACCACTGCGACATCTCTCATCATCGCTGAAGCTCCGACGATGGAGCTCGCATTACAGGCACCGGCAACTCTTTCCCGGAGTAAATTCCACCATACTAATTTTTCTTATTCAAACGCCATCTTCATTTCTCGTCCCGACAAGCAAACTCCATTGCCTCAATTTTCCCGCCAAACCCACCCTCCATTCCAAGTCCGAGCTAGGCATTCAACTTACAGGACGCAGAGTTCTGTGTTTAAGAACCAATTGGTTAGCGTTAGCGTTAGCGACGATGAACTCATTGAAGAAGAAGAAGAAGAAACAGGCGGTGAAGGGGCGAGCTCTTCGTACTCTGACGATGAGTTATCCTTTTTGTCTCTGAATGAGAAACCTGATAGAAACTTGACTTTGCTTGACGATTACGAGATGGAGGAGCTTGGATACCCCTGCGACCTTAACCATAGAAGCGGATATGCGGCTCTAGTAGGGAAGCCGAATGTTGGGAAGAGTACTCTTGTAAACCAATTGATAGGGCAGAAATTGTCCATTGTTACGGATAAACCTCAAACGACGAGGCACCGGATTCTGGGTATATGTTCTGGACCGGAGTATCAGGTGATACTTTATGATACACCTGGTGTCATTGAGAAGAAAATGCACAAGTTGGATACCATGATGATGAAGAATGTACGCAGTGCGGCCGTTAATGCAGACTGTGTTTTGGTTGTTGTTGATGCGTGTAAAGCGCCTCAGAAAATTGATGAGATTTTGGAAGGAGGTGTAGGAGACCTCAAAGAAATGCCTCCCACCTTGCTGGTTTTAAATAAAAAAGATTTGATCAAACCGGGTGAAATTGCAAAGAAACTTGAGTGGTATGAAAAATTTACTAATGTCGATGAGGTTATACCTGTGAGTGCCAAGTACGGCCATGGGATAGAAGATGTGAGGGAATGGATACTTTCCAAACTCCCTCTTGGACCAGCCTATTATCCAAAGGATATAGTAAGTGAACATCCAGAAAGGTTTTTTGTTTCTGAAATTGTTAGAGAAAAGATATTCATGCAATATCGCAATGAAGTTCCTTATGCATGTCAGGTGAATGTGGTGAGCTACAAGAGTAGACCAGGTGCAAAAGATTTTATTCAAACAGAAATTGTCGTTGAGAAAAATTCTCAGAAAATTATTCTCATCGGGAAGGAAGGAAAGGCTCTAAAACTGCTTGCAACAGCTGCTCGCCTCGATATAGAAGATTTCTTGCAAAAGAAAGTCTATCTTGAGATTGAAGTAAAAGTGAAAGAAAATTGGAGGCAAGATGAAGGGCTGCTGAAGCACTATGGTTATGAAGGACGAATTCAAGCATTGTAA 1488 42.81 MLSFFGARRNPITLGALLQKKSPKFHVFAFQNGTVSVFIYTARLIPLSSTTATSLIIAEAPTMELALQAPATLSRSKFHHTNFSYSNAIFISRPDKQTPLPQFSRQTHPPFQVRARHSTYRTQSSVFKNQLVSVSVSDDELIEEEEEETGGEGASSSYSDDELSFLSLNEKPDRNLTLLDDYEMEELGYPCDLNHRSGYAALVGKPNVGKSTLVNQLIGQKLSIVTDKPQTTRHRILGICSGPEYQVILYDTPGVIEKKMHKLDTMMMKNVRSAAVNADCVLVVVDACKAPQKIDEILEGGVGDLKEMPPTLLVLNKKDLIKPGEIAKKLEWYEKFTNVDEVIPVSAKYGHGIEDVREWILSKLPLGPAYYPKDIVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVVSYKSRPGAKDFIQTEIVVEKNSQKIILIGKEGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYEGRIQAL* 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3666523 3670142 + CsaV3_4G005500.1 Csa04g00550 526160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00550 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 398 IPR027417 -
Csa04g00550 495 Gene3D - 378 492 IPR015946 -
Csa04g00550 495 TIGRFAM small_GTP: small GTP-binding protein domain 202 359 IPR005225 GO:0005525
Csa04g00550 495 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 196 366 IPR030388 GO:0005525
Csa04g00550 495 PANTHER GTPASE ERA 147 489 IPR005662 GO:0003723|GO:0005525
Csa04g00550 495 Pfam KH domain 400 477 IPR004044 GO:0003723
Csa04g00550 495 MobiDBLite consensus disorder prediction 138 161 - -
Csa04g00550 495 PANTHER GTPASE ERA-LIKE, CHLOROPLASTIC 147 489 - -
Csa04g00550 495 PRINTS GTP1/OBG GTP-binding protein family signature 200 220 IPR006073 GO:0005525
Csa04g00550 495 PRINTS GTP1/OBG GTP-binding protein family signature 249 264 IPR006073 GO:0005525
Csa04g00550 495 Pfam 50S ribosome-binding GTPase 200 317 IPR006073 GO:0005525
Csa04g00550 495 CDD Era 195 364 IPR030388 GO:0005525
Csa04g00550 495 Hamap GTPase Era [era]. 195 488 IPR005662 GO:0003723|GO:0005525
Csa04g00550 495 Gene3D - 193 377 IPR027417 -
Csa04g00550 495 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 373 489 IPR009019 GO:0003723
Csa04g00550 495 TIGRFAM era: GTP-binding protein Era 199 471 IPR005662 GO:0003723|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00550 K03595 era, ERAL1; GTPase - csv:101204144 805.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00550 Csa-Chr4:3666523 Csa06g03890 Csa-Chr6:30767227 1.51E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1003 . . . Bda10g00141 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0771 . . . . Chy07g01293 . . . . . Bpe10g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00550 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010370 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00550 Csa_Chr04 FPKM 30.564281 32.449577 8.734428 7.465407 6.060818 5.629193 6.439594 1.992441 2.090991 2.193752