Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00567 ATGTCGCTTAAAAGCTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCTAAGCGAGGAGAAGAAGGGAGTAGGCATTGGCGAAACCGGACGATGTCACACATTGCACCGGATCAAGAACCTTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTTCCCCCCGAATTACTTTTAGACATCATCCGAAGAGTGGAAGAGAGTGAAACCTCGTGGCCTGCACGAGCTGTAGTTGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGAACCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTCATCAGAAGAGATAGAGCAACTTCAACCTACCTCCTTTACTTTGGTTTGGTTCCTTCGGAGGATGAAAAGGATAAATTGTTGTTAGCAGCTAAGAGGGTCAGGAGAGCAGCTGGTACTGACTTCATCATATCCTTAGCAGCTGATGACTTTTCTCGAGCTAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGACAGCCAGCCTCCTTGTGACCCTGCAGCTCGACAAAATAGCCGGTCAAGCCGCAGATTTCGCTCTAAGCAAGTCTCTCCTAGGGTTCCTGCATGTAACTACAGCGTAGGTACAATATCATATGAACTTAATGTTCTTCGTACTAGAGGTCCTCGGAGAATGCAGTGCATCATGCAAACGATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACATCATTCACATACTCTCTTGATGACCACCTTTCTTCCATGTCCGATTCTATGAGAAAGGATTCAACAACCAAGGACTTTGGCTCAAAGATCCAATCTGAACCAGCAGTTCGGGCCTCGGATGAATCCTTGGTACTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGACGAGTGACTGTTGCATCCGTTAAGAACTTTCAACTTGTTGCAGCTGTTGATCAATCTCACAATGTTTCAGTAGAAGAGCAAGAGAAGGTAATTCTCCAGTTTGGAAAAATCGGAAAAGACATTTTCACCATGGATTATCATTACCCCCTTTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA 1245 45.62 MSLKSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRTITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGLVPSEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAARQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSLDDHLSSMSDSMRKDSTTKDFGSKIQSEPAVRASDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3753112 3756669 - CsaV3_4G005670.1 Csa04g00567 526177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00567 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
Csa04g00567 414 Pfam Tub family 117 409 IPR000007 -
Csa04g00567 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Csa04g00567 414 SUPERFAMILY Tubby C-terminal domain-like 105 414 IPR025659 -
Csa04g00567 414 Pfam F-box domain 56 102 IPR001810 GO:0005515
Csa04g00567 414 PANTHER TUBBY-RELATED 1 414 - -
Csa04g00567 414 SUPERFAMILY F-box domain 50 100 IPR036047 GO:0005515
Csa04g00567 414 Gene3D - 50 103 - -
Csa04g00567 414 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Csa04g00567 414 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Csa04g00567 414 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Csa04g00567 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Csa04g00567 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Csa04g00567 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Csa04g00567 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Csa04g00567 414 MobiDBLite consensus disorder prediction 207 227 - -
Csa04g00567 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Csa04g00567 414 Gene3D Tubby Protein; Chain A 114 414 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00567 Csa-Chr4:3753112 Csa06g00572 Csa-Chr6:4906059 1.74E-156 dispersed
Csa03g01871 Csa-Chr3:14425098 Csa04g00567 Csa-Chr4:3753112 2.00E-155 transposed
Csa06g00522 Csa-Chr6:4410794 Csa04g00567 Csa-Chr4:3753112 7.41E-152 transposed
Csa03g04225 Csa-Chr3:36997702 Csa04g00567 Csa-Chr4:3753112 0 wgd
Csa04g00567 Csa-Chr4:3753112 Csa06g03246 Csa-Chr6:27387767 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31505 PF01167 Tub 1.20E-106 CL0395 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00567 K19600 - csv:101205595 799.275