Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00575 ATGATTTCCTCGTCCAATGGCATTTCGCCGTCCCTTAAAGTTAAGACAGAGCTCTATAACCCTACTGCTAACTGGGTTTTTGTTCCTTTGAGGAGAGCATTTCAGTATAGAAGCAAATGTGTAATGAATAGGAGAAGTTTTGCTTTTAGGGGAATTGTGGCTTCTGGAGTTTCGGTTATGGGCTCCTCTGCGGTTATACAGCCTGCTCAAGGGATGGAAAGATTACCATTCAAACCAGAAGGTTATAACTTCTGGACATGGCGGGGTCACAAGATACATTATGTTGTACAAGGAGAAGGTCCTCCGATAGTTCTTATACATGGTTTTGGTGCTTCTGTATTTCATTGGAGGTATAACATACCAGAGCTGGCTAAGAAGTACAAGGTCTATGCCTTAGACTTGCTGGGATTTGGGTGGAGTGATAAAGCACTTATTGAGTACGATGCCATGGTCTGGAGGGATCAAGTTGTCGATTTTACGAAGGAAGTAGTGAAACAGCCTGCAGTTTTAGTTGGGAACAGCCTTGGAGGGTTTACTGCCTTGGTTTCTGCAGCAGGGTTGCCGGAGCAGGTTCGTGGAGTTGTATTACTAAACTCCGCTGGGCAGTTTGGAGATGTAAATAAGTTGACAGAAGAGCCAGAAGAAACCAGCTTCCAGAAGTTCATTTCGAAGCCGCTGAAGGATTTTTTTCAGCGAATCTTTCTTGGAGTTCTTTTCTGGCAAACCAAGCAACCAGCTAGAATTGTTTCTGTTTTGAAGAGTGTATACATAAATTCTGAAAATGTGGATGATTATCTGGTAGAGTCTATATCGATTCCAGCAGCTGATCCAAATGCTAGAGAAGTTTACTACAGATTGATGACAAGATTCATGTTCAATCAAAGCAAATATACTCTAAACAGTGTATTGAGTGAGCTGCGGTGTCCACTGTTGTTGTTGTGGGGTGATTTGGATCCATGGGTTGGTCCTGCTAAGGCCAACAGAATCAAAGAATTTTATCCCAACACAACTCTTGTAAATTTGAAAGCAGGGCATTGCCCACATGATGAAGTTCCTGAGCTTGTCAATTCTGCTTTGATGGATTGGCTAGCAACTCTACAACAACTTCAGCCAACACTCTGA 1122 42.69 MISSSNGISPSLKVKTELYNPTANWVFVPLRRAFQYRSKCVMNRRSFAFRGIVASGVSVMGSSAVIQPAQGMERLPFKPEGYNFWTWRGHKIHYVVQGEGPPIVLIHGFGASVFHWRYNIPELAKKYKVYALDLLGFGWSDKALIEYDAMVWRDQVVDFTKEVVKQPAVLVGNSLGGFTALVSAAGLPEQVRGVVLLNSAGQFGDVNKLTEEPEETSFQKFISKPLKDFFQRIFLGVLFWQTKQPARIVSVLKSVYINSENVDDYLVESISIPAADPNAREVYYRLMTRFMFNQSKYTLNSVLSELRCPLLLLWGDLDPWVGPAKANRIKEFYPNTTLVNLKAGHCPHDEVPELVNSALMDWLATLQQLQPTL* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3779237 3782329 - CsaV3_4G005750.1 Csa04g00575 526185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00575 373 SUPERFAMILY alpha/beta-Hydrolases 83 363 IPR029058 -
Csa04g00575 373 PRINTS Epoxide hydrolase signature 107 125 IPR000639 GO:0003824
Csa04g00575 373 PRINTS Epoxide hydrolase signature 184 197 IPR000639 GO:0003824
Csa04g00575 373 PRINTS Epoxide hydrolase signature 340 362 IPR000639 GO:0003824
Csa04g00575 373 Pfam Alpha/beta hydrolase family 103 357 IPR000073 -
Csa04g00575 373 PRINTS Alpha/beta hydrolase fold signature 126 141 IPR000073 -
Csa04g00575 373 PRINTS Alpha/beta hydrolase fold signature 170 183 IPR000073 -
Csa04g00575 373 PRINTS Alpha/beta hydrolase fold signature 184 197 IPR000073 -
Csa04g00575 373 PANTHER PHEOPHYTINASE, CHLOROPLASTIC-LIKE ISOFORM X1 14 371 - -
Csa04g00575 373 Gene3D alpha/beta hydrolase 81 368 IPR029058 -
Csa04g00575 373 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 14 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00575 - - - csv:101207761 717.998
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00575 Csa-Chr4:3779237 Csa04g01234 Csa-Chr4:10907539 1.36E-46 dispersed
Csa06g03150 Csa-Chr6:26872219 Csa04g00575 Csa-Chr4:3779237 5.54E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g993 Blo04g00911 . . . Bpe15g00423 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1635 . . . Chy07g01233 . . . . . . . . . . . . . . . . . Cpe14g00520 . . . . . . . . . . . . . . . Csa04g00575 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010323 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00575 Csa_Chr04 FPKM 35.132442 37.49881 25.412926 31.660301 26.584734 23.452349 25.803299 32.030186 31.644648 33.205051