Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00577 ATGTCCATATCTTGCATGAAAATCGCCCTCCCCGCCCAATATTCTCCATGCGTTCGTCCAGCAAATCGTCAAAGATACCGGGGTGTTGCTGTTGCAAGTCTGAGAGGAGATTTTGCTACTTTGGGGGTGAGTTTTACTGAAGGCGAAGGAAGTTTACCCAAGGTTGTGCTCACTTCTCCGAGTGGCAGTGAGGCTGATGTATATTTGTATGGAGGATGCATTACATCTTGGAGACTCGCTAATGGGAAGGATCTCCTGTTTGTTCGCCCGGATGCTGTTTTTAACAAGAAGAAACCAATCAGTGGAGGCATTCCACATTGTTTCCCACAATTTGGACCTGGCCCTATTCAACAGCATGGATTTGCAAGAAACGTGGATTGGTCCGTCTTTGATTCTGAAAGTGTTGAAGGCAACCCAGGTGTAACTCTTGAACTAAAGGATGATTCATATAGTCGTTCCATGTGGGATTTCAGTTTTCATGCTCTATACAAGATTATTTTGAGCGAAAGGAGCCTTTCCACTGAGCTAATAATTAAGAATACTGACAAGAAGCCATTTTCATTTACTACGGCATTGCATACATATTTTAATGCTTCTATAAGTGGAGTAAAAGTTGGGGGATTGAAGGGTTGTAAAACATTGAACAAAGATCCAGATCCCACCAATCCATTGGAGGGTGTGGAAGAAAGGGACGTGGTCAGTTTTCCTGGATTTGTTGATTGTGTTTATCTTGATGCACCTGGAGAATTGAATCTGGATAATGGATTGGGTGACAACATACTTATCAGCAATACAAATTGGTCCGATGCAGTGTTATGGAACCCGCATTTGCAGATGGAAGCATGCTATAGGGATTTCGTTTGTGTTGAGAATGCTAAGATAAGGAAGGTCCAGCTAGAGCCTGATCAATCTTGGACAGCGACGCAGGAACTTAGAATTACTTGA 945 42.96 MSISCMKIALPAQYSPCVRPANRQRYRGVAVASLRGDFATLGVSFTEGEGSLPKVVLTSPSGSEADVYLYGGCITSWRLANGKDLLFVRPDAVFNKKKPISGGIPHCFPQFGPGPIQQHGFARNVDWSVFDSESVEGNPGVTLELKDDSYSRSMWDFSFHALYKIILSERSLSTELIIKNTDKKPFSFTTALHTYFNASISGVKVGGLKGCKTLNKDPDPTNPLEGVEERDVVSFPGFVDCVYLDAPGELNLDNGLGDNILISNTNWSDAVLWNPHLQMEACYRDFVCVENAKIRKVQLEPDQSWTATQELRIT* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3784057 3789478 - CsaV3_4G005770.1 Csa04g00577 526187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00577 314 SUPERFAMILY Galactose mutarotase-like 55 311 IPR011013 GO:0003824|GO:0005975|GO:0030246
Csa04g00577 314 PIRSF PHexose_mutarotase 43 314 IPR025532 -
Csa04g00577 314 Pfam Aldose 1-epimerase 54 311 IPR008183 GO:0005975|GO:0016853
Csa04g00577 314 PANTHER APOSPORY-ASSOCIATED PROTEIN C-RELATED 26 313 - -
Csa04g00577 314 CDD D-hex-6-P-epi_like 54 312 IPR025532 -
Csa04g00577 314 PANTHER GLUCOSE-6-PHOSPHATE 1-EPIMERASE 26 313 - -
Csa04g00577 314 Gene3D - 51 313 IPR014718 GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00577 K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] - csv:101207518 636.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00837 Csa-Chr3:7118429 Csa04g00577 Csa-Chr4:3784057 1.49E-38 dispersed
Csa04g00577 Csa-Chr4:3784057 Csa04g00635 Csa-Chr4:4244509 2.14E-38 dispersed
Csa04g00577 Csa-Chr4:3784057 Csa02g00649 Csa-Chr2:4902823 9.18E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g989 . Blo16g00050 . . . Bpe13g00440 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0817 . . . . . Chy07g01232 . . . Bda11g01861 . . . . Bma06g00118 . . . . . . . . Cpe14g00477 . . . . . . . . . . . . . . . Csa04g00577 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010275 1 3 1 0 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 1 1 0 1 1 1 0 1 2 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00577 Csa_Chr04 FPKM 66.698883 70.01429 59.7206 60.685108 72.585876 80.66571 76.917709 54.008198 54.624992 58.87302