Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00581 ATGAGAACACTTTGTGACGCTTGTGAAAAGGCTGCTGCTATTGTCTTTTGTGCTGCTGATGAAGCCGCCCTTTGCCGCTCTTGTGACGAGAAGGTTCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAATCCCAGTGATGTTCCCCGTTGTGATATATGTGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTTGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCATCTCCACATTCCAAGGTTCCTAATGAGATTGGTAAAGTACATAACCAGCCACCTCCGCATAAAGTGACAGTAGAAGACAACCAGCAAAATCATCACCGACTATCACCTGTTCGAGAGGCCAACGATGATGGTCATGCTGAGACTGATACGAAAATGATCGATTTGAATATGAAGCCTCATAGGGTCCATGGCCAGGCTGCTAATAATCAGGATCTATGA 561 44.21 MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQAANNQDL* 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3819528 3822914 - CsaV3_4G005810.1 Csa04g00581 526191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00581 186 CDD Bbox1_BBX-like 4 47 - -
Csa04g00581 186 MobiDBLite consensus disorder prediction 139 163 - -
Csa04g00581 186 MobiDBLite consensus disorder prediction 107 163 - -
Csa04g00581 186 CDD Bbox1_BBX-like 56 96 - -
Csa04g00581 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Csa04g00581 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 184 - -
Csa04g00581 186 Gene3D Classic Zinc Finger 2 96 - -
Csa04g00581 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Csa04g00581 186 SMART bboxneu5 51 96 IPR000315 GO:0008270
Csa04g00581 186 SMART bboxneu5 1 47 IPR000315 GO:0008270
Csa04g00581 186 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Csa04g00581 186 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Csa04g00581 186 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02104 Csa-Chr2:19152113 Csa04g00581 Csa-Chr4:3819528 1.76E-23 dispersed
Csa04g00581 Csa-Chr4:3819528 Csa04g00821 Csa-Chr4:5753161 6.93E-26 dispersed
Csa04g00581 Csa-Chr4:3819528 Csa06g03304 Csa-Chr6:27677901 4.40E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31506 PF00643 zf-B_box 2.40E-06 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00581 - - csv:101208899 398.282