Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00582 ATGGGAGCTGTCGGTGCGGAAGAAATAATGGAAGAGACATCTGGGCGTGAAGAGAGAATTTTGGTATCAGTTCGTGTGCGCCCTTTGAACGAGAAGGAGATTTCAAGGAATGACGTTTCGGAATGGGAATGCATCAACGACAACACTGTTATATGCAGGAATGCGCTTTCGGTGGCTGAACGCTCGTATCCGTCTGCATATACATTTGACAGGGTATTCGGTTGCGATTGCTCGACAAGGAAGGTCTATGAGGAAGGCGCCAAGGAAGTTGCCCTGTCTGTTGTCAGTGGAGTTAACTCAACTATTTTTGCCTATGGGCAAACAAGCAGCGGGAAAACGTACACCATGAGTGGAATTACGGAGTACACTATCGAAGATATATATGACTACATAAAGAAGCATACGGAGAGGGAGTTTTTTTTGAAGTTCTCTGCCATAGAGATATATAATGAATCTGTGAGGGACCTCCTTAGCGTAGACAGTTCTCCTCTTAGACTCCTGGATGATCCAGAGAGGGGAACCACAGTTGAGAAACTAACGGAAGAAACTCTGAGGGACTGGAATCATTTTAGACAGCTTTTATCTCTTTGCGAAGCTCAAAGGCAGATAGGGGAGACGTCTTTGAATGAAGCAAGCTCCAGATCTCATCAGATTCTTAGATTGACAATTGAGAGCTCGGCTCGTGAATTTTTAGGCAAGGACAAATCGAGTTCTCTCACTGCTACTGTGAATTTTGTCGATCTGGCGGGAAGTGAGCGCGCATCGCAGTCGTTATCAGCTGGTGCACGTCTGAAAGAAGGTTGTCACATAAATCGTAGTTTGCTTACTCTTGGGACTGTTATTCGTAAGCTCAGCAAGGGAAGAAATGGACACATTCCTTTCAGGGATTCGAAGTTGACTCGTATATTGCAATCTTCCTTGGGAGGCAATGCCAGAACTGCCATCATCTGTACCATGAGCCCTGCTCAAATCCATGTTGAGCAATCAAGAAACACACTGTTTTTTGCAAGTTGTGCTAAAGAAGTTGTTACTAATGCTCAGGTAAATGTAGTCGTGTCTGATAAGGCACTGGTAAAACAATTGCAAAGAGAATTGGCGAGATTGGAAAGTGAGTTAAAAAGCACTGTGCAAACTTCTGGAACACCTGATTTCGCATTAATTAGAGAAAAAGATCTTCAGATTGAAAAGCTTAAAAAGGACTTAAGAGAGCTTACCTTGGAACGGGACTATGCACAATCTCAGGTTAAGGATCTGCTTAAAATGGTTGAAGATGATAAACCTCTAATATCATCGGCGACAGATTTGGATGATCAGTATTCAAGATTACGGGTGCGGTCATCATGGGATTTTGAGAATCGCCCATCTCAGACAACCGTAATGACAGAATCTCGAATCATCGGTGATGATTCTGGATCTTTTGACGCTTCTCAGTATTTAGGTGGACATAACATTAGTTTCGATGATAATTTTATGCATCTCGTCGAAGTTGAAAAGGATTTCCTGCAAGGCCAATCCCCTCAACGAGTATCATCGGTGGTTTCCTCTTTGGTTGATACTCAACAAAATCTTGTCGAAGTTGAAGAACTGTCTTATGAGAACTCTGAGGACATCTGTAAGGAAGTTAGATGTATTGAGATGGAAGAATCAAGTATGAATAGATACTTAGTTTCTACCATGTCAGATTCCAGCCCAGAAAGTTATGTTAATTCTGGCCCAGAAAGATACGTTAATTCTACCACTCCGTTACCTGTAGCAAACACAACCACCTCGAAAGTAGTTGATAATGGACAAAGTAAAGAATGTAAATTAGAATCATCCCCTGCAGAAGAAGATAGTAAGTCTAACAACTTCAGTCCTTTCTATGTAATCCTATCCCCGGAGAAACCTTCTCCATGGAATATGGACAAAGATATCTGTAACACTGGACGATTAAACCTAACTAGGAGTAGAAGTTGTAAAGCTACTATTATGAGAACCTTATCTTCGGAGAATATCAAGGAATTCCTGAGCACACCACCAATTTGGCTTGGAAAAGACTTCGTAGGGAGACCTGAGAGCTTCCAATTAAATCTTCATACATTGAAATATGATGTTGAGTCTGAGAGGTCGTCACTAACTCGTTCTCAAACTTCCCAGAAGAGTGCTTCCAAAGATGCGCATATTGAACAGAATTTTGATGTGTTCGAAGATGACAAAAGTGATGTGACAACTTCAGCAACAGAACTAGAACATGACCGGCTATCCAATTTTGAGAGAGAAAATCAACTTCTTGATGCAACAAAGCAGATATCCAATCTTAACAGTGAAAATCATCTTCTTGATGCAGCCGTGCTTGAGGCTAAGTCAAATTCCATTGAATCTGGGAAGAATGTGGAAGATGTTGGCGTGGATCCAATCCATAATAACAACATGATAAGTCCTTCAAAATGGCCTTCGGAGTTTAGAAGACTTCAAAAAGACATCATTGAACTGTGGCATATTTGTAACGTCTCATTGGTGCATAGGACCTACTTTTTCCTTCTATTTCAAGGTGGCGATCCAGCTGATTCCATTTACATGGAGGTTGAGTTGAGAAGACTATCCTTTCTTAGAGACACATTTTGTCGAGGAAATCCTACTGTCAGAAACGGTGAAACACTGACACAAGCATTGAGTTTGAAATCGCTTCACCGGGAGAGACAAATGTTGTGCAAACAAATGGAGAAGAAACTGTCAAAGAAACAAAGAGAGAGCCTATTTGTAGAATGGGGCATTGGATTGAATTCTAACAATAGAAGATTGCAATTGGCTCATCTTGTGTGGAACGATGCAAAAGATATGGATCACATAAGAAAGAGCGCAGCCATTGTTGCAAAACTTGTTAACTACGTAGAACCAGATCAAGCCTCCAAAGAGATGTTTGGTCTTAATTTCACACCACGCCACGATGCTCCAGGAATCGCCTCCTTGGAGACAAAACATGAAGGTTGTCTCGTAATGTAA 2982 41.55 MGAVGAEEIMEETSGREERILVSVRVRPLNEKEISRNDVSEWECINDNTVICRNALSVAERSYPSAYTFDRVFGCDCSTRKVYEEGAKEVALSVVSGVNSTIFAYGQTSSGKTYTMSGITEYTIEDIYDYIKKHTEREFFLKFSAIEIYNESVRDLLSVDSSPLRLLDDPERGTTVEKLTEETLRDWNHFRQLLSLCEAQRQIGETSLNEASSRSHQILRLTIESSAREFLGKDKSSSLTATVNFVDLAGSERASQSLSAGARLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPAQIHVEQSRNTLFFASCAKEVVTNAQVNVVVSDKALVKQLQRELARLESELKSTVQTSGTPDFALIREKDLQIEKLKKDLRELTLERDYAQSQVKDLLKMVEDDKPLISSATDLDDQYSRLRVRSSWDFENRPSQTTVMTESRIIGDDSGSFDASQYLGGHNISFDDNFMHLVEVEKDFLQGQSPQRVSSVVSSLVDTQQNLVEVEELSYENSEDICKEVRCIEMEESSMNRYLVSTMSDSSPESYVNSGPERYVNSTTPLPVANTTTSKVVDNGQSKECKLESSPAEEDSKSNNFSPFYVILSPEKPSPWNMDKDICNTGRLNLTRSRSCKATIMRTLSSENIKEFLSTPPIWLGKDFVGRPESFQLNLHTLKYDVESERSSLTRSQTSQKSASKDAHIEQNFDVFEDDKSDVTTSATELEHDRLSNFERENQLLDATKQISNLNSENHLLDAAVLEAKSNSIESGKNVEDVGVDPIHNNNMISPSKWPSEFRRLQKDIIELWHICNVSLVHRTYFFLLFQGGDPADSIYMEVELRRLSFLRDTFCRGNPTVRNGETLTQALSLKSLHRERQMLCKQMEKKLSKKQRESLFVEWGIGLNSNNRRLQLAHLVWNDAKDMDHIRKSAAIVAKLVNYVEPDQASKEMFGLNFTPRHDAPGIASLETKHEGCLVM* 994
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3831401 3839382 + CsaV3_4G005820.1 Csa04g00582 526192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00582 993 SMART kinesin_4 17 350 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa04g00582 993 Pfam Domain of unknown function (DUF3490) 813 974 IPR021881 -
Csa04g00582 993 Pfam Kinesin motor domain 25 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa04g00582 993 Gene3D Kinesin motor domain 9 373 IPR036961 -
Csa04g00582 993 ProSiteProfiles Kinesin motor domain profile. 19 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa04g00582 993 CDD KISc_CENP_E 20 342 - -
Csa04g00582 993 MobiDBLite consensus disorder prediction 562 589 - -
Csa04g00582 993 PANTHER CENTROMERE PROTEIN E 11 976 - -
Csa04g00582 993 PRINTS Kinesin heavy chain signature 97 118 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa04g00582 993 PRINTS Kinesin heavy chain signature 206 223 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa04g00582 993 PRINTS Kinesin heavy chain signature 242 260 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa04g00582 993 PRINTS Kinesin heavy chain signature 292 313 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa04g00582 993 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 374 IPR027417 -
Csa04g00582 993 Coils Coil 351 378 - -
Csa04g00582 993 PANTHER KINESIN-LIKE PROTEIN KIN-7H 11 976 - -
Csa04g00582 993 ProSitePatterns Kinesin motor domain signature. 241 252 IPR019821 GO:0003777|GO:0005524|GO:0007018
Csa04g00582 993 Coils Coil 387 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00582 K11498 CENPE; centromeric protein E - csv:101218717 1936.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02109 Csa-Chr2:19175594 Csa04g00582 Csa-Chr4:3831401 0 dispersed
Csa04g00582 Csa-Chr4:3831401 Csa05g01950 Csa-Chr5:22781800 1.65E-38 dispersed
Csa04g00582 Csa-Chr4:3831401 Csa07g00039 Csa-Chr7:486158 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1085 . . . . . . . . Cmo04g00793 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0729 Cone6ag1670 Cone9ag1592 . . Chy07g01228 . Blo05g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00582 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005179 0 5 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 0 1 1 6 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00582 Csa_Chr04 FPKM 54.018505 59.159115 58.779999 55.578896 48.388828 50.484917 53.178822 85.937103 91.120041 97.938995