Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00590 ATGGGGATCAACATCCAATTAGGTCATTTGATTGTTGGTTTTATCATATTTGATTGTTTGTTTAAACCCATATTGGCAGAAGCTGATGACCAAAACCCAAAGGTACACATAGTTTACTTGGGAGAAAAGCCACATCATGATACTAAATTCACTATCGATTCTCACCATCAATTATTATCTACTATATTGGGAAGCAAGGAGAAATCAATGGAAGCAATGGTGTACAGTTATAAACATGGCTTTTCTGGATTTGCAGCCAAGCTCACTAAATCTCAAGCTCAAAAGCTATCTGAAATGTCGAGGGTGGTTCGAGTTGTCCCGAGTTCGCTTTACAAAGTGCATACTACAAGAAGTTGGGATTTTCTGGGGCTGTCTTCTTCTCCATTTGAGTCCTCAAACCTTCTTCATCGTGCTCAAATGGGTGAAAATGTCATTATAGGTGTTATTGATACAGGAATCTGGCCGGAGTCGGAGTCGTTCAAAGACAAAGGAGTAGGGTCTATACCATCACGTTGGAAAGGAACATGCGAATCAGGAGAACAATTCAACTCCACAAACTGCAACAAAAAAATCATAGGAGCGCGTTGGTTCATGAAGGGGTTCGTTGCAGACTTAGGTCGAGATGCGCTAGCCAAGGAATACTTATCACCACGAGACCTAAATGGACATGGAACTCACACAGCCAGCATAGCAGCAGGCTCATTTGTAGCAAACATCAATTACCACAACAACGCTGCCGGCACAGTGAGAGGTGGTGCACCACTCGCACGGTTAGCCATATACAAAGCACTATGGACGAAGGACGCCGTAGGGTCGACGGCGGACATATTGAAAGCGATAGATGAGGCTATAAATGATGGTGTGGATGTGTTGTCTATGTCGATTGGAAGCTTAACTCCTTTCCTTCCAGAGTTCAATGAAGCAAATGATATTGCATTTGGGTCATTTCATGCTATTGCAAAGGGGATTTCTGTTGTATGTGCGGCTGGAAATAGTGGGCCTACTCCACAAACGGTGGAGAATGTTGCACCTTGGATTTTCACTGTGGCTGCCAATACTATAGACAGAGCCTTTCTTGCATCCATTACAACACTACCAGATAACACCACTTTCTTGGGCCAAAGCTTATTGGATTCGAAAAAGGACCTTGTTGCCGAGTTGGAGACTCTGGATACGGGAAGATGTGATGATCTTTTGGGAAATGAAACTTTCATAAATGGAAAGGTGGTTATGTGTTTTTCAAATTTAGCTGATCATAACACTATATACGATGCGGCGATGGCGGTGGCCCGAGCAAATGGAACAGGAATTATTGTCGCCGGCCAACAAGATGATGATTTGTTTTCTTGTATACCCTCTCCAATTCCATGTATCCTAGTTGATACCGACGTTGGCTCAAAATTATTCTTCATCAACCTCTTGCAAAATAGTACTAATCCAGTGGTAAGGTTGAGGGCCACAAGAACTATCATCGGTAAGCCCATAACACCAGCTATTTCCTATTTCTCATCAAGAGGTCCAAATTCGGTTTCCAATCCTATTCTTAAGCCTGACATATCGGCTCCTGGATCTAACATTCTAGCTGCCGTTTCACCCCACCACATTTTCAACGAGAAAGGGTTTATGCTCTTGTCAGGAACTTCTATGGCCACACCTCATATTTCAGCTATCGTCGCTCTTCTTAAATCTGTGCACCCTACGTGGTCACCCGCCGCCATTAAATCAGCTCTCATGACAACCGCACGGACAGAGGTCTCTCCAGGACTACCTATTTTCGCAGAAGGAACTCCTCCAAAAATGGCAGACCCATTTGACTACGGCGGTGGAATCGTGGACGCAAACGCCGCAGTCGACCCAGGTCTTGTCTATGATATGGGTAGAAAAGATTACATAGATTATTACCTTTGTGGCATGGGGTATAAGGACGAGGATATTTCTCATCTAACACAGAGGAAAACAGTGTGTCCATTGCAAAGGTTGTCTGTGTTGGATTTGAATTTGCCGGCCATTACAATTCCTTCACTTGTAAACTCCACCATTGTGACTCGGACAGTGACTAATGTTGGGAACTTGAGCTGTGTTTATAAGGCAGAGATTGAGTCTCCTTTTGGTTGCAAGGTTAGTGTGAACCCTCAAGTGTTGGTGTTTAACTCTCAAGTGAAGAAGATTTCATTTAAGGTTATGTTTTTCACTCAAGTTCAAAGGAACTATGGCTACTCTTTTGGTAGGTTAACATGGACTGATGGTATTCATGTTGTTAAAATTCCTTTGTCTGTGAGATTTGGTTTCTTTTGA 2295 43.09 MGINIQLGHLIVGFIIFDCLFKPILAEADDQNPKVHIVYLGEKPHHDTKFTIDSHHQLLSTILGSKEKSMEAMVYSYKHGFSGFAAKLTKSQAQKLSEMSRVVRVVPSSLYKVHTTRSWDFLGLSSSPFESSNLLHRAQMGENVIIGVIDTGIWPESESFKDKGVGSIPSRWKGTCESGEQFNSTNCNKKIIGARWFMKGFVADLGRDALAKEYLSPRDLNGHGTHTASIAAGSFVANINYHNNAAGTVRGGAPLARLAIYKALWTKDAVGSTADILKAIDEAINDGVDVLSMSIGSLTPFLPEFNEANDIAFGSFHAIAKGISVVCAAGNSGPTPQTVENVAPWIFTVAANTIDRAFLASITTLPDNTTFLGQSLLDSKKDLVAELETLDTGRCDDLLGNETFINGKVVMCFSNLADHNTIYDAAMAVARANGTGIIVAGQQDDDLFSCIPSPIPCILVDTDVGSKLFFINLLQNSTNPVVRLRATRTIIGKPITPAISYFSSRGPNSVSNPILKPDISAPGSNILAAVSPHHIFNEKGFMLLSGTSMATPHISAIVALLKSVHPTWSPAAIKSALMTTARTEVSPGLPIFAEGTPPKMADPFDYGGGIVDANAAVDPGLVYDMGRKDYIDYYLCGMGYKDEDISHLTQRKTVCPLQRLSVLDLNLPAITIPSLVNSTIVTRTVTNVGNLSCVYKAEIESPFGCKVSVNPQVLVFNSQVKKISFKVMFFTQVQRNYGYSFGRLTWTDGIHVVKIPLSVRFGFF* 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3888813 3895061 + CsaV3_4G005900.1 Csa04g00590 526200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00590 764 CDD PA_subtilisin_like 364 484 - -
Csa04g00590 764 Pfam Subtilase family 141 586 IPR000209 GO:0006508|GO:0008236
Csa04g00590 764 ProSitePatterns Serine proteases, subtilase family, serine active site. 546 556 IPR023828 -
Csa04g00590 764 Gene3D - 355 491 - -
Csa04g00590 764 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 114 IPR037045 -
Csa04g00590 764 Gene3D Peptidase S8/S53 domain 143 630 IPR036852 GO:0004252|GO:0006508
Csa04g00590 764 PANTHER SUBTILISIN-LIKE PROTEASE SBT3.1-RELATED 26 760 - -
Csa04g00590 764 Pfam Peptidase inhibitor I9 35 114 IPR010259 -
Csa04g00590 764 PANTHER PEPTIDASE S8 26 760 - -
Csa04g00590 764 Gene3D - 635 761 - -
Csa04g00590 764 SUPERFAMILY Subtilisin-like 135 621 IPR036852 GO:0004252|GO:0006508
Csa04g00590 764 ProSiteProfiles Serine proteases, subtilase domain profile. 118 617 - -
Csa04g00590 764 Pfam Fibronectin type-III domain 664 759 IPR041469 -
Csa04g00590 764 PRINTS Subtilisin serine protease family (S8) signature 141 160 IPR015500 -
Csa04g00590 764 PRINTS Subtilisin serine protease family (S8) signature 219 232 IPR015500 -
Csa04g00590 764 PRINTS Subtilisin serine protease family (S8) signature 545 561 IPR015500 -
Csa04g00590 764 CDD Peptidases_S8_3 111 581 IPR034197 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01453 Csa-Chr1:10166376 Csa04g00590 Csa-Chr4:3888813 2.91E-167 dispersed
Csa04g00590 Csa-Chr4:3888813 Csa06g03738 Csa-Chr6:29827158 3.76E-166 dispersed
Csa07g01352 Csa-Chr7:13416139 Csa04g00590 Csa-Chr4:3888813 3.25E-13 dispersed
Csa07g01353 Csa-Chr7:13421447 Csa04g00590 Csa-Chr4:3888813 1.58E-13 dispersed
Csa04g00590 Csa-Chr4:3888813 Csa07g02348 Csa-Chr7:21727193 2.65E-147 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00590 - - csv:101219903 1531.54