Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00592 ATGGATGATTTTGCTTCATCATCTTCTAGATTTCATCATCATGACTACTACAACAACAGCAACAACACAAGAATCAGAGATTTTGATGACGAACAACAACAACAGCAGCAACAACAACAAGATCAAGAAATGGAGGAAGAATCTTGTAACAACAGCAACAACAACAATTGTTCTATTTTTGTAGAGAAAGAGCATATGTTTGACAAAGTTGTAACACCAAGCGATGTGGGGAAACTAAACCGTTTAGTTATACCAAAACAACATGCTGAAAAATACTTCCCACTTGATTCTTCATCAAACGAAAAAGGTCTTCTCTTAAACTTCGAAGATCGTTGTGGTAAACTATGGCGGTTTCGTTACTCTTACTGGACTAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTTTCTTTTCAAAGACCCCTTCATCGTAATCAAGATCGTTTCTTTATCGATTGGCGACGCCGTCCTCCACACCCGGCTGTCGACATGCCTTTTCATTTCCACCGCCATGATGGTGGCACCGGTGCCGCCCAATTTCCTCCTCCTCCTCCTCATCATCACCATTTTCAGCTTCATAGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACAAAGGGACCACGTCCTCCACTTGCCACAGTATAATAATAATGTCAGTTTATTTCATAATACATATAATCATCATCATCATCATAATCGTTATCTTGACGGTTCGTATGGTGGAGCATCGGTCTTTTACCATTTGAGATCCCCAATCGCACCACCGCAGGTAGAGTCGGTGCCAGTTGTAGCGGATGGAAATGGTGGTAATGGTGGTGGAGGTAGTGGAATTGGGAGAACGTCTGCGGCTAAGACGACGTTGAGGCTTTTTGGTGTTGACATGGAATGTGAAGTATCTGATGATGAGTGTGACGTAGCCACAACTTCGAAGGCAATGTCATCGTCGTCGCAATTTCATGTTTATAATGGAATGCCGATGCCGATGTTGACACCGATGACGATGCAGATGCCCACGAGCAATAATAATATATCAACTATGGACTTCTTTGAGAAAGGGAAGTCGTCGATGTCGTCAATGTCATCTTTTGATTTTGGTGCTTGA 1155 42.51 MDDFASSSSRFHHHDYYNNSNNTRIRDFDDEQQQQQQQQQDQEMEEESCNNSNNNNCSIFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHRNQDRFFIDWRRRPPHPAVDMPFHFHRHDGGTGAAQFPPPPPHHHHFQLHSQWNNNPVATPLSLQRDHVLHLPQYNNNVSLFHNTYNHHHHHNRYLDGSYGGASVFYHLRSPIAPPQVESVPVVADGNGGNGGGGSGIGRTSAAKTTLRLFGVDMECEVSDDECDVATTSKAMSSSSQFHVYNGMPMPMLTPMTMQMPTSNNNISTMDFFEKGKSSMSSMSSFDFGA* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3908314 3912965 + CsaV3_4G005920.1 Csa04g00592 526202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00592 384 CDD B3_DNA 65 154 IPR003340 GO:0003677
Csa04g00592 384 MobiDBLite consensus disorder prediction 1 51 - -
Csa04g00592 384 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 30 354 - -
Csa04g00592 384 MobiDBLite consensus disorder prediction 17 31 - -
Csa04g00592 384 Pfam B3 DNA binding domain 67 170 IPR003340 GO:0003677
Csa04g00592 384 Gene3D - 60 177 IPR015300 -
Csa04g00592 384 SUPERFAMILY DNA-binding pseudobarrel domain 64 165 IPR015300 -
Csa04g00592 384 MobiDBLite consensus disorder prediction 32 51 - -
Csa04g00592 384 ProSiteProfiles B3 DNA-binding domain profile. 67 171 IPR003340 GO:0003677
Csa04g00592 384 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 30 354 IPR044800 GO:0003700
Csa04g00592 384 SMART B3_2 67 171 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00592 Csa-Chr4:3908314 Csa05g02582 Csa-Chr5:27134879 9.32E-46 dispersed
Csa01g03118 Csa-Chr1:27284528 Csa04g00592 Csa-Chr4:3908314 8.76E-28 transposed
Csa03g03451 Csa-Chr3:30990269 Csa04g00592 Csa-Chr4:3908314 6.09E-47 transposed
Csa05g01482 Csa-Chr5:17061938 Csa04g00592 Csa-Chr4:3908314 6.34E-40 transposed
Csa06g00841 Csa-Chr6:6759884 Csa04g00592 Csa-Chr4:3908314 8.46E-63 transposed
Csa07g01483 Csa-Chr7:15178731 Csa04g00592 Csa-Chr4:3908314 3.33E-08 transposed
Csa04g00592 Csa-Chr4:3908314 Csa05g00141 Csa-Chr5:765460 2.53E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31508 PF02362 B3 6.90E-28 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00592 - - csv:101220139 712.22