Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00592 ATGGATGATTTTGCTTCATCATCTTCTAGATTTCATCATCATGACTACTACAACAACAGCAACAACACAAGAATCAGAGATTTTGATGACGAACAACAACAACAGCAGCAACAACAACAAGATCAAGAAATGGAGGAAGAATCTTGTAACAACAGCAACAACAACAATTGTTCTATTTTTGTAGAGAAAGAGCATATGTTTGACAAAGTTGTAACACCAAGCGATGTGGGGAAACTAAACCGTTTAGTTATACCAAAACAACATGCTGAAAAATACTTCCCACTTGATTCTTCATCAAACGAAAAAGGTCTTCTCTTAAACTTCGAAGATCGTTGTGGTAAACTATGGCGGTTTCGTTACTCTTACTGGACTAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTTTCTTTTCAAAGACCCCTTCATCGTAATCAAGATCGTTTCTTTATCGATTGGCGACGCCGTCCTCCACACCCGGCTGTCGACATGCCTTTTCATTTCCACCGCCATGATGGTGGCACCGGTGCCGCCCAATTTCCTCCTCCTCCTCCTCATCATCACCATTTTCAGCTTCATAGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACAAAGGGACCACGTCCTCCACTTGCCACAGTATAATAATAATGTCAGTTTATTTCATAATACATATAATCATCATCATCATCATAATCGTTATCTTGACGGTTCGTATGGTGGAGCATCGGTCTTTTACCATTTGAGATCCCCAATCGCACCACCGCAGGTAGAGTCGGTGCCAGTTGTAGCGGATGGAAATGGTGGTAATGGTGGTGGAGGTAGTGGAATTGGGAGAACGTCTGCGGCTAAGACGACGTTGAGGCTTTTTGGTGTTGACATGGAATGTGAAGTATCTGATGATGAGTGTGACGTAGCCACAACTTCGAAGGCAATGTCATCGTCGTCGCAATTTCATGTTTATAATGGAATGCCGATGCCGATGTTGACACCGATGACGATGCAGATGCCCACGAGCAATAATAATATATCAACTATGGACTTCTTTGAGAAAGGGAAGTCGTCGATGTCGTCAATGTCATCTTTTGATTTTGGTGCTTGA 1155 42.51 MDDFASSSSRFHHHDYYNNSNNTRIRDFDDEQQQQQQQQQDQEMEEESCNNSNNNNCSIFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHRNQDRFFIDWRRRPPHPAVDMPFHFHRHDGGTGAAQFPPPPPHHHHFQLHSQWNNNPVATPLSLQRDHVLHLPQYNNNVSLFHNTYNHHHHHNRYLDGSYGGASVFYHLRSPIAPPQVESVPVVADGNGGNGGGGSGIGRTSAAKTTLRLFGVDMECEVSDDECDVATTSKAMSSSSQFHVYNGMPMPMLTPMTMQMPTSNNNISTMDFFEKGKSSMSSMSSFDFGA* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3908314 3912965 + CsaV3_4G005920.1 Csa04g00592 526202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00592 384 CDD B3_DNA 65 154 IPR003340 GO:0003677
Csa04g00592 384 MobiDBLite consensus disorder prediction 1 51 - -
Csa04g00592 384 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 30 354 - -
Csa04g00592 384 MobiDBLite consensus disorder prediction 17 31 - -
Csa04g00592 384 Pfam B3 DNA binding domain 67 170 IPR003340 GO:0003677
Csa04g00592 384 Gene3D - 60 177 IPR015300 -
Csa04g00592 384 SUPERFAMILY DNA-binding pseudobarrel domain 64 165 IPR015300 -
Csa04g00592 384 MobiDBLite consensus disorder prediction 32 51 - -
Csa04g00592 384 ProSiteProfiles B3 DNA-binding domain profile. 67 171 IPR003340 GO:0003677
Csa04g00592 384 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 30 354 IPR044800 GO:0003700
Csa04g00592 384 SMART B3_2 67 171 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00592 - - - csv:101220139 712.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00592 Csa-Chr4:3908314 Csa05g02582 Csa-Chr5:27134879 9.32E-46 dispersed
Csa01g03118 Csa-Chr1:27284528 Csa04g00592 Csa-Chr4:3908314 8.76E-28 transposed
Csa03g03451 Csa-Chr3:30990269 Csa04g00592 Csa-Chr4:3908314 6.09E-47 transposed
Csa05g01482 Csa-Chr5:17061938 Csa04g00592 Csa-Chr4:3908314 6.34E-40 transposed
Csa06g00841 Csa-Chr6:6759884 Csa04g00592 Csa-Chr4:3908314 8.46E-63 transposed
Csa07g01483 Csa-Chr7:15178731 Csa04g00592 Csa-Chr4:3908314 3.33E-08 transposed
Csa04g00592 Csa-Chr4:3908314 Csa05g00141 Csa-Chr5:765460 2.53E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g277 . . . . . . Bma07g01046 Bma14g00089 Cmo06g00500 Cmo16g00647 . . . Car15g01205 . Cpe14g00507 . . . . . . . . Cla07g00776 Cam07g0833 Cec07g0888 Cco07g0865 Clacu07g0810 Cmu07g0816 Cre07g1170 . . . . . . . Cme07g01632 Blo03g00788 Blo19g00130 Bda07g00161 . Bpe08g00913 Bpe11g00381 . . . . . Cma06g00497 Cma16g00597 . . Cpe08g00992 . . . . . . . . . . . . . . . . Csa04g00592 Chy07g01218 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g03451 . 1 166 RAV Transcription Factor Family AT2G36080 59.3 5.3e-48 187.6
Csa06g00841 . 15 146 RAV Transcription Factor Family AT2G36080 62.2 5.7e-42 167.5
Csa05g00141 . 50 161 RAV Transcription Factor Family AT2G36080 68.7 7.0e-40 160.6
Csa04g00592 . 62 170 RAV Transcription Factor Family AT2G36080 70.8 1.2e-39 159.8
Csa05g02582 . 173 302 RAV Transcription Factor Family AT2G36080 58.8 2.9e-38 155.2
Csa05g00141 . 49 167 RAV Transcription Factor Family AT2G46870 85.8 3.0e-57 219.2
Csa06g00841 . 8 127 RAV Transcription Factor Family AT2G46870 78.3 1.4e-51 200.3
Csa05g02582 . 179 287 RAV Transcription Factor Family AT2G46870 69.6 2.8e-39 159.5
Csa03g03451 . 36 158 RAV Transcription Factor Family AT2G46870 61.9 2.6e-37 152.9
Csa03g03451 . 33 196 RAV Transcription Factor Family AT3G11580 56.7 4.8e-44 174.9
Csa05g00141 . 50 163 RAV Transcription Factor Family AT3G11580 60.8 2.7e-39 159.1
Csa06g00841 . 15 134 RAV Transcription Factor Family AT3G11580 59.1 6.0e-39 157.9
Csa04g00592 . 62 170 RAV Transcription Factor Family AT3G11580 64.5 7.8e-39 157.5
Csa05g00141 . 51 169 RAV Transcription Factor Family AT3G61970 80.3 2.5e-53 206.1
Csa06g00841 . 16 127 RAV Transcription Factor Family AT3G61970 80.2 1.2e-47 187.2
Csa05g02582 . 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.6e-39 160.2
Csa05g00141 . 53 168 RAV Transcription Factor Family AT4G01500 68.3 2.9e-42 169.5
Csa06g00841 . 9 127 RAV Transcription Factor Family AT4G01500 65.6 4.2e-41 165.6
Csa04g00592 . 63 195 RAV Transcription Factor Family AT4G01500 56.0 6.7e-39 158.3
Csa03g03451 . 41 241 RAV Transcription Factor Family AT5G06250 54.9 3.0e-50 195.7
Csa04g00592 . 63 170 RAV Transcription Factor Family AT5G06250 69.7 4.4e-41 165.2
Csa05g00141 . 53 161 RAV Transcription Factor Family AT5G06250 64.7 1.8e-39 159.8
Csa06g00841 . 18 127 RAV Transcription Factor Family AT5G06250 65.0 1.8e-39 159.8
Csa05g02582 . 179 287 RAV Transcription Factor Family AT5G06250 62.4 6.5e-37 151.4
Csa01g01873 . 45 339 RAV Transcription Factor Family AT1G50680 54.0 1.9e-86 316.2
Csa01g03118 . 52 355 RAV Transcription Factor Family AT1G50680 52.5 2.3e-79 292.7
Csa01g01873 . 41 340 RAV Transcription Factor Family AT1G51120 51.9 1.6e-83 306.6
Csa01g03118 . 52 266 RAV Transcription Factor Family AT1G51120 64.5 2.4e-79 292.7
Csa05g02582 . 22 343 RAV Transcription Factor Family AT1G13260 65.4 3.2e-105 378.6
Csa05g01482 . 1 289 RAV Transcription Factor Family AT1G13260 61.3 1.4e-92 336.7
Csa05g00141 . 54 161 RAV Transcription Factor Family AT1G13260 71.6 7.6e-38 154.8
Csa06g00841 . 19 127 RAV Transcription Factor Family AT1G13260 69.1 3.8e-37 152.5
Csa03g03451 . 41 159 RAV Transcription Factor Family AT1G13260 65.5 4.9e-37 152.1
Csa05g02582 . 15 341 RAV Transcription Factor Family AT3G25730 62.6 2.2e-98 355.9
Csa05g01482 . 34 289 RAV Transcription Factor Family AT3G25730 65.6 1.7e-87 319.7
Csa05g02582 . 1 345 RAV Transcription Factor Family AT1G68840 61.3 1.1e-111 400.2
Csa05g01482 . 1 292 RAV Transcription Factor Family AT1G68840 59.1 2.7e-91 332.4
Csa05g00141 . 53 161 RAV Transcription Factor Family AT1G68840 70.3 2.0e-38 156.8
Csa03g03451 . 41 175 RAV Transcription Factor Family AT1G68840 61.8 2.7e-38 156.4
Csa06g00841 . 18 134 RAV Transcription Factor Family AT1G68840 64.7 4.6e-38 155.6
Csa05g02582 . 15 341 RAV Transcription Factor Family AT3G25730 62.6 2.2e-98 355.9
Csa05g01482 . 34 289 RAV Transcription Factor Family AT3G25730 65.6 1.7e-87 319.7
Csa01g01873 . 41 340 RAV Transcription Factor Family AT1G51120 51.9 1.6e-83 306.6
Csa01g03118 . 52 266 RAV Transcription Factor Family AT1G51120 64.5 2.4e-79 292.7
Csa03g03451 . 33 196 RAV Transcription Factor Family AT3G11580 56.7 4.8e-44 174.9
Csa05g00141 . 50 163 RAV Transcription Factor Family AT3G11580 60.8 2.7e-39 159.1
Csa06g00841 . 15 134 RAV Transcription Factor Family AT3G11580 59.1 6.0e-39 157.9
Csa04g00592 . 62 170 RAV Transcription Factor Family AT3G11580 64.5 7.8e-39 157.5
Csa05g00141 . 53 168 RAV Transcription Factor Family AT4G01500 68.3 2.9e-42 169.5
Csa06g00841 . 9 127 RAV Transcription Factor Family AT4G01500 65.6 4.2e-41 165.6
Csa04g00592 . 63 195 RAV Transcription Factor Family AT4G01500 56.0 6.7e-39 158.3
Csa03g03451 . 1 166 RAV Transcription Factor Family AT2G36080 59.3 5.3e-48 187.6
Csa06g00841 . 15 146 RAV Transcription Factor Family AT2G36080 62.2 5.7e-42 167.5
Csa05g00141 . 50 161 RAV Transcription Factor Family AT2G36080 68.7 7.0e-40 160.6
Csa04g00592 . 62 170 RAV Transcription Factor Family AT2G36080 70.8 1.2e-39 159.8
Csa05g02582 . 173 302 RAV Transcription Factor Family AT2G36080 58.8 2.9e-38 155.2
Csa03g03451 . 41 241 RAV Transcription Factor Family AT5G06250 54.9 3.0e-50 195.7
Csa04g00592 . 63 170 RAV Transcription Factor Family AT5G06250 69.7 4.4e-41 165.2
Csa05g00141 . 53 161 RAV Transcription Factor Family AT5G06250 64.7 1.8e-39 159.8
Csa06g00841 . 18 127 RAV Transcription Factor Family AT5G06250 65.0 1.8e-39 159.8
Csa05g02582 . 179 287 RAV Transcription Factor Family AT5G06250 62.4 6.5e-37 151.4
Csa05g00141 . 49 167 RAV Transcription Factor Family AT2G46870 85.8 3.0e-57 219.2
Csa06g00841 . 8 127 RAV Transcription Factor Family AT2G46870 78.3 1.4e-51 200.3
Csa05g02582 . 179 287 RAV Transcription Factor Family AT2G46870 69.6 2.8e-39 159.5
Csa03g03451 . 36 158 RAV Transcription Factor Family AT2G46870 61.9 2.6e-37 152.9
Csa01g01873 . 45 339 RAV Transcription Factor Family AT1G50680 54.0 1.9e-86 316.2
Csa01g03118 . 52 355 RAV Transcription Factor Family AT1G50680 52.5 2.3e-79 292.7
Csa05g00141 . 51 169 RAV Transcription Factor Family AT3G61970 80.3 2.5e-53 206.1
Csa06g00841 . 16 127 RAV Transcription Factor Family AT3G61970 80.2 1.2e-47 187.2
Csa05g02582 . 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.6e-39 160.2
Csa05g02582 . 22 343 RAV Transcription Factor Family AT1G13260 65.4 3.2e-105 378.6
Csa05g01482 . 1 289 RAV Transcription Factor Family AT1G13260 61.3 1.4e-92 336.7
Csa05g00141 . 54 161 RAV Transcription Factor Family AT1G13260 71.6 7.6e-38 154.8
Csa06g00841 . 19 127 RAV Transcription Factor Family AT1G13260 69.1 3.8e-37 152.5
Csa03g03451 . 41 159 RAV Transcription Factor Family AT1G13260 65.5 4.9e-37 152.1
Csa05g02582 . 1 345 RAV Transcription Factor Family AT1G68840 61.3 1.1e-111 400.2
Csa05g01482 . 1 292 RAV Transcription Factor Family AT1G68840 59.1 2.7e-91 332.4
Csa05g00141 . 53 161 RAV Transcription Factor Family AT1G68840 70.3 2.0e-38 156.8
Csa03g03451 . 41 175 RAV Transcription Factor Family AT1G68840 61.8 2.7e-38 156.4
Csa06g00841 . 18 134 RAV Transcription Factor Family AT1G68840 64.7 4.6e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31508 PF02362 B3 6.90E-28 CL0405 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00592 Csa_Chr04 FPKM 25.271431 27.925945 13.565135 11.647417 7.09634 7.375376 6.558466 3.7391 3.370346 3.15246