Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00593 ATGTGGATTTTTGGATGGAAAGGACCATCTGGGTTTTCAGCCCGTTCTACTGCAGAAGAAGTCACCGAAGGAATTGATGGCAATGGCCTCACTGCTATTGTTACAGGAGCTTCAAGTGGTCTCGGCGAAGAGAGCACACGTGTTCTTGCATTACGAGGAGTTTATGTCATTATGGCTGTAAGAAATATTGAAGCAGGAAGAAAAGTAAAAGAAGCAGTGTTGAAGGAATCCCCTTCTGCTAAAATTGATGTCATGGAGTTAGACCTTTCTTCGATGGAATCTGTGAGGAAATTTGCAGCAGATTATATTGCATCTGGCCTTCCACTAAATATTCTCATGAACAATGCTGGTGTTATGGCTACTCCTTTTATGCTTTCCCATGATGGCATAGAACTGCAGTTTGCAACAAATCATTTAGGACATTTTCTCCTGACGAACCTTCTGCTGGAAACCATGAAAAAAACTGTGCTTGAAAGCAAAAAGGAAGGAAGAATTGTCAATCTATCATCAGAGGGTCACCGAATTACATATGGTGAAGGAATTCGTTTTAATAAAATCAATAATGAATCAGAGTACAGAACCATCTTAGCTTATGGACAATCAAAGCTTTCCAACATATTGCACGCAAAAGAGCTTGCCAGGCGGTTAAAGGTAGAAGGGGTAGAAATAACAGCCAACGCTCTTCATCCTGGATCAATTGCTACCAATCTGCTACGCTTCCATAGTACCATTAATGCTGTTACTAATTTGGTCGCTAAATACGTGCTTAAAAATGTCCAGCAGGGAGCAGCAACTCAGTGTTATGTAGCACTGAATCCCCAAGTGAAAGGGGTAAGTGGAGAGTATTTTGTTGATAGTAATATTGCTAACCCAACAAATCATGCTAAAGATATGGATTTAGCCAAGAAACTGTGGGATTTCAGTGTGGATCTAACCAACCCAAAATAA 948 40.51 MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVTGASSGLGEESTRVLALRGVYVIMAVRNIEAGRKVKEAVLKESPSAKIDVMELDLSSMESVRKFAADYIASGLPLNILMNNAGVMATPFMLSHDGIELQFATNHLGHFLLTNLLLETMKKTVLESKKEGRIVNLSSEGHRITYGEGIRFNKINNESEYRTILAYGQSKLSNILHAKELARRLKVEGVEITANALHPGSIATNLLRFHSTINAVTNLVAKYVLKNVQQGAATQCYVALNPQVKGVSGEYFVDSNIANPTNHAKDMDLAKKLWDFSVDLTNPK* 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3923424 3932357 - CsaV3_4G005940.1 Csa04g00593 526203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00593 315 PANTHER RETINOL DEHYDROGENASE 2 312 - -
Csa04g00593 315 Gene3D - 24 315 - -
Csa04g00593 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
Csa04g00593 315 Pfam short chain dehydrogenase 31 172 IPR002347 -
Csa04g00593 315 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 312 - -
Csa04g00593 315 CDD retinol-DH_like_SDR_c_like 29 305 - -
Csa04g00593 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Csa04g00593 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Csa04g00593 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Csa04g00593 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Csa04g00593 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00593 - - K19329 csv:101210378 598.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa04g00593 Csa05g00120 CCT
Csa04g00593 Csa05g00120 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00593 Csa-Chr4:3923424 Csa05g00121 Csa-Chr5:613328 7.49E-153 dispersed
Csa05g01349 Csa-Chr5:14263451 Csa04g00593 Csa-Chr4:3923424 1.09E-25 dispersed
Csa01g00128 Csa-Chr1:753010 Csa04g00593 Csa-Chr4:3923424 2.72E-90 transposed
Csa01g00510 Csa-Chr1:3398644 Csa04g00593 Csa-Chr4:3923424 3.37E-36 transposed
Csa03g03196 Csa-Chr3:29502516 Csa04g00593 Csa-Chr4:3923424 2.94E-131 transposed
Csa07g01356 Csa-Chr7:13446288 Csa04g00593 Csa-Chr4:3923424 1.81E-23 transposed
Csa04g00593 Csa-Chr4:3923424 Csa05g00120 Csa-Chr5:607480 1.82E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g310 Blo02g01124 Blo03g00227 . Bda08g00502 Bpe05g00662 . . . . Cmo16g00644 . Cma15g01280 . Car15g01154 . Cpe14g00505 . . . . . . . . Cla07g00772 Cam07g0831 Cec07g0886 Cco07g0863 Clacu07g0808 Cmu07g0814 Cre07g1168 Cone8ag0615 . . Cone9ag0789 . Csa05g00120 Chy09g01373 Cme07g01630 . . . . . . Bma05g00836 . . . . . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 Cla01g00106 Cam01g0105 Cec01g0106 Cco01g0107 Clacu01g0103 Cmu01g0104 Cre09g2402 Lsi09g00092 Csa04g00593 . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00593 Csa_Chr04 FPKM 1.992165 2.70134 2.430592 2.057357 2.046718 3.527303 2.915519 10.75121 8.222076 8.513869