Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00598 ATGGGTTGTGGCTGTTCAAAACTCTCAGGGTGCTGTTGGACTTTAGATCATAACAAGCCTGTTCCTGACCTCCAGGATGTTGAAAACGAAGGCAGTAGTGACCTCGACATACCTGCATTTCGTGAATACACCATTGAGCAACTAAGGATAGCTACATCTGGATTTGCTGTTGAGAATATAGTTTCAGAACATGGGGAAAAGGCTCCAAATGTTGTTTATAAGGGGAAGCTCGAGAATCAAAAACGGATTGCCGTCAAACGGTTCGACAGATCAGCTTGGCCAGATGCTAGGCAATTTCTGGAAGAGGCCAAGAATGTAGGTCTGCTACGAAATCTAAGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGTGATGAGAGATTACTAATTGCAGAATATATGCCTAATGAAACGTTGGCAAAGCACTTGTTTCATTGGGATTCTCAACCTTTGAAATGGATCATGCGGTTAAGAGTGGCCTTATATATTGCACAAGCTTTGGAGTACTGTACAAGTAAAGGCCGTGCCCTATATCATGATCTCAATGCCTATAGAGTCGTTTTTGATGATGATGGAAACCCCAGGCTTTCATGCTTTGGTATGATGAAAAACAGTAGAGATGGTAAAAGCTACAGCACAAATTTGGCATTTTGTCCTCCGGAGTATCTAAAAACAGGAAGAGTTACTCCAGAAAGTGTTATGTACAGCTTTGGCACTCTATTGCTTGACCTCCTCAGTGGAAAACATATCCCACCTAGCCATGCTCTTGACTTAATAAGGGACAGGAATCTTCAAATGCTGACAGATTCTTGTTTGGAAGGACAATTTTCAAATGATGAAGGAACTGAGTTAGTGAGATTAGCTTCTCGCTGCTTGCAGTATGAGCCTCGAGAACGCCCTAATCCAAAATCATTAGTTTCCTCTCTAACTCCTCTTCAGACGGACACTGAGGTTCCTTCACATGTATTATTGGGCATACCTCGTGATGCCTCAGATTTGCCTCTTACACCACTTGGAGAAGCTTGCTTAAGAATGGATTTGACTGTCATCCACGAGATTTTAGAAAAGATAAACTACAAGGATGATGAGGGTTCAGCAACTGAGCTTTCCTTCCAGATGTGGACCAACCAGATGCAGGAAACATTGAGTTCAAAGAAAAATGGTGATCTTGCTTTTAGACATAAGGATTTTAGAGCTGCAATTGATTCCTATACACAGTTCATTGATGCCGGAGCTGTGCTTTCTCCAACAATGTTTGCACGTCGTAGTTTGTCGTATCTTGCATGTGAGATGCCCCAAGAAGCTCTAAATGATGCAATGCAAGCTCAAGTTATATCACCTGTCTGGCATATTGCATCTTATTTGCAAGCTGCTGCACTTTTTGCACTTGGTAGTAACAACGAGGCACAAACAGCTCTCAGGGAGGGATTTGCACTTGAGACCAAAACAACTGCCAAATAA 1461 42.37 MGCGCSKLSGCCWTLDHNKPVPDLQDVENEGSSDLDIPAFREYTIEQLRIATSGFAVENIVSEHGEKAPNVVYKGKLENQKRIAVKRFDRSAWPDARQFLEEAKNVGLLRNLRLANLLGCCCEGDERLLIAEYMPNETLAKHLFHWDSQPLKWIMRLRVALYIAQALEYCTSKGRALYHDLNAYRVVFDDDGNPRLSCFGMMKNSRDGKSYSTNLAFCPPEYLKTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSNDEGTELVRLASRCLQYEPRERPNPKSLVSSLTPLQTDTEVPSHVLLGIPRDASDLPLTPLGEACLRMDLTVIHEILEKINYKDDEGSATELSFQMWTNQMQETLSSKKNGDLAFRHKDFRAAIDSYTQFIDAGAVLSPTMFARRSLSYLACEMPQEALNDAMQAQVISPVWHIASYLQAAALFALGSNNEAQTALREGFALETKTTAK* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3944267 3952842 - CsaV3_4G005980.1 Csa04g00598 526208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00598 486 Gene3D Tetratricopeptide repeat domain 379 486 IPR011990 GO:0005515
Csa04g00598 486 Pfam Protein tyrosine and serine/threonine kinase 71 309 IPR001245 GO:0004672|GO:0006468
Csa04g00598 486 ProSiteProfiles Protein kinase domain profile. 58 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00598 486 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK3 1 485 - -
Csa04g00598 486 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 485 IPR045845 GO:0004672|GO:0009742
Csa04g00598 486 Gene3D Phosphorylase Kinase; domain 1 30 133 - -
Csa04g00598 486 SUPERFAMILY Protein kinase-like (PK-like) 34 319 IPR011009 -
Csa04g00598 486 SUPERFAMILY TPR-like 383 483 IPR011990 GO:0005515
Csa04g00598 486 Gene3D Transferase(Phosphotransferase) domain 1 135 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00598 K14500 BSK; BR-signaling kinase [EC:2.7.11.1] - csv:101211110 983.015
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa04g00598 Csa05g00285 CCT
Csa04g00598 Csa05g00285 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00598 Csa-Chr4:3944267 Csa05g00285 Csa-Chr5:1765311 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g326 . . . Bda08g00519 . . . . . . Cma02g01456 . Car02g01222 . . . Cpe05g00330 . . . . . . . Cla07g00767 Cam07g0823 Cec07g0881 Cco07g0858 Clacu07g0802 Cmu07g0807 Cre07g1162 Cone8ag0308 Cone12ag0309 Cone6ag0775 Cone9ag0780 . Csa05g00285 Chy09g01223 Cme07g01626 . . . . . . . . . Cmo02g01491 . . . . . . . Bhi12g00254 . . . . . . Cla01g00268 Cam01g0275 Cec01g0268 Cco01g0283 Clacu01g0275 Cmu01g0263 Cre09g2245 Lsi09g00263 Csa04g00598 Chy07g01213 Cme09g01759
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000293 4 9 3 3 3 3 5 4 4 3 4 3 5 4 4 5 3 11 5 4 4 4 4 4 4 4 4 17 7 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78121 PF07714 PK_Tyr_Ser-Thr 2.90E-25 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00598 Csa_Chr04 FPKM 1.321181 0.0 4.626986 3.455373 2.130364 1.858956 2.050389 1.2527 0.896704 0.960194