Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00602 ATGAGGCAAGCGGGGGCATATTCCGGCGTGATGTACTGGAAAACAGGACCACACTCGCTGCCGTTAGCGAGGATAAAGAAGATCATGAAGAAATCGGGAGAGGAGGTGAAGATGATCTCCGGTGAGGCGCCGATCGTGTTCTCGAAGGCGTGTGAATTGTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGCTTCATAAAGAGGATGTGGCTTCCGCTATTCTGGCTACGGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCACTCCCGCCGCCACCGGAGATCTTGGTGAAAGTGAAACTATTTCGGTAGGTTGTTGA 360 49.17 MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVGC* 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3971972 3973216 - CsaV3_4G006020.1 Csa04g00602 526212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00602 119 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 102 - -
Csa04g00602 119 SUPERFAMILY Histone-fold 15 92 IPR009072 GO:0046982
Csa04g00602 119 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 102 - -
Csa04g00602 119 Gene3D Histone, subunit A 11 97 IPR009072 GO:0046982
Csa04g00602 119 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 19 83 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00602 - - - csv:101220846 237.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00602 Csa-Chr4:3971972 Csa07g00504 Csa-Chr7:3626972 4.83E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g346 Blo02g01104 . . Bda08g00526 Bpe05g00636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g01623 . . . . . . Bma05g00812 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00602 Chy07g01210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014449 1 1 2 1 1 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 1 1 1 1 0 1 1 1 1 1 21
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31509 PF00808 CBFD_NFYB_HMF 2.70E-18 CL0012 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00602 Csa_Chr04 FPKM 20.419384 21.050032 57.938572 59.450123 6.676208 8.058133 7.805673 0.424127 0.535922 0.371202