Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00604 ATGCTGATTCAAGCTTACTCCCAGAACCCCCATTTCTTCTTTCTTCCCTCAAACCCTTCAATTTCCCCCCACCTCTCCTTCAATGTTTCTCATTCACCTAAACTTAAATCGCCGGTGGGTCGACGATATGAATCAATGTCCAGGATTTCAGCTTCTGGGGAGCACAATCCCACCATCATTGTGGGGAAGAAAAGAAAGGTTTTCGAACACATTTCTTTGCTTAAAGCCAAGGAAAATATTTCTGAAGAAGAAGAGAATGATATGCTCGATTATCTCTATACCACGCAGTATCAAATGAGGGGCATTGTGGCCGTTTCATTAGGACGTGCTTGTGATCAAAATAATGAAAGGTATACCCATGGTGTGTATATGCGTTTCCAAAGTAAGGAAGACCTTGAAAAATTCTATGTGAATCCTTTCTACTTGCGAGTACTAAATGAGCATGTGATGCCTTATTGTCATGGACTGGTTCATGTAGATTATAAATCAGAGGTGGAAGATGACATGCTTCCCATATTTCGGAAAGGAGAGGAGTTCAATTATGGTGTGGAGTTTGTGCTTCTCATTAAATTTCGTCAAGATTCATTTGGCAAACCTTTAGAAGATGCATTAAATTCTCTCGAGAGACTGACAATTGATAATCCTTCCTTAATTGTCCAGTTTACTCAAGGTTTAAATTTTAATCCTAGTTGTAAGGAATTCACACATGGAGTTGTTATACGATTTCGGTCAATCAATGCCTTCGAGATATTTACAGGCAGCTCACAATACAAAGATATATGGAAATCTAAATTCCAACCAATCATCCAGAAGACAGTGGCTCTTCACTTCTCTGTTGACCCAGTAGGGACGGAGATCATGTAG 864 39.7 MLIQAYSQNPHFFFLPSNPSISPHLSFNVSHSPKLKSPVGRRYESMSRISASGEHNPTIIVGKKRKVFEHISLLKAKENISEEEENDMLDYLYTTQYQMRGIVAVSLGRACDQNNERYTHGVYMRFQSKEDLEKFYVNPFYLRVLNEHVMPYCHGLVHVDYKSEVEDDMLPIFRKGEEFNYGVEFVLLIKFRQDSFGKPLEDALNSLERLTIDNPSLIVQFTQGLNFNPSCKEFTHGVVIRFRSINAFEIFTGSSQYKDIWKSKFQPIIQKTVALHFSVDPVGTEIM* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3987987 3991548 - CsaV3_4G006040.1 Csa04g00604 526214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00604 287 Gene3D - 60 166 - -
Csa04g00604 287 SUPERFAMILY Dimeric alpha+beta barrel 183 282 IPR011008 -
Csa04g00604 287 Pfam Stress responsive A/B Barrel Domain 69 162 IPR013097 -
Csa04g00604 287 Gene3D - 182 283 - -
Csa04g00604 287 SUPERFAMILY Dimeric alpha+beta barrel 69 162 IPR011008 -
Csa04g00604 287 SMART Dabb_2 68 163 IPR013097 -
Csa04g00604 287 SMART Dabb_2 183 279 IPR013097 -
Csa04g00604 287 ProSiteProfiles Stress-response A/B barrel domain profile. 68 161 IPR013097 -
Csa04g00604 287 PANTHER - 19 287 IPR044662 -
Csa04g00604 287 PANTHER EXPRESSED PROTEIN 19 287 - -
Csa04g00604 287 ProSiteProfiles Stress-response A/B barrel domain profile. 183 277 IPR013097 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00604 - - - csv:101221322 585.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00021 Csa-Chr2:263100 Csa04g00604 Csa-Chr4:3987987 4.44E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g358 . . Bda06g00082 . . Bpe07g00117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g01621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00604 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007129 1 2 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 8 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00604 Csa_Chr04 FPKM 10.203449 10.156814 10.458373 11.786534 8.653452 7.57132 9.341239 13.022579 12.284192 14.416721