Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00608 ATGATTGTGAAAGTAGTCTTGAAAGTGGATGTACAAGATGGAAAAGCCAAGCAGAAGGCTATGAAATTAGTTTCCACCCTCCCAGGGATAAATTCCATAATGATGGATATGAATGAGAGGAAGATGACAGTAATCGGAGAAGTAGACCCAGTTGAAGTAATTGAAAAGCTTAGAAAATCCTGGTTTGCTGAGATTCTCACAGTTGGACCTCCAGAAGAAATTAAAAAAGAACCACCACCATCACCAACGAAAGAATGTATTCCCTATCCATATTACTATCCATATTACTATCCAAATTATATCATACTCGAAGAAAACCCAAATCCTTGTGTTATGTGTTAA 342 36.84 MIVKVVLKVDVQDGKAKQKAMKLVSTLPGINSIMMDMNERKMTVIGEVDPVEVIEKLRKSWFAEILTVGPPEEIKKEPPPSPTKECIPYPYYYPYYYPNYIILEENPNPCVMC* 114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4008731 4009898 + CsaV3_4G006080.1 Csa04g00608 526218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00608 113 Pfam Heavy-metal-associated domain 7 62 IPR006121 GO:0046872
Csa04g00608 113 SUPERFAMILY HMA, heavy metal-associated domain 4 60 IPR036163 GO:0046872
Csa04g00608 113 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 4 113 - -
Csa04g00608 113 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 4 113 - -
Csa04g00608 113 Gene3D - 2 73 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00608 - - - csv:105435346 200.675
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa04g00608 Csa05g00244 CCT
Csa04g00608 Csa05g00244 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00608 Csa-Chr4:4008731 Csa05g00243 Csa-Chr5:1483491 1.33E-28 dispersed
Csa03g04690 Csa-Chr3:40747910 Csa04g00608 Csa-Chr4:4008731 1.59E-14 transposed
Csa03g00863 Csa-Chr3:7251170 Csa04g00608 Csa-Chr4:4008731 1.49E-27 wgd
Csa04g00608 Csa-Chr4:4008731 Csa05g00242 Csa-Chr5:1480408 1.28E-21 wgd
Csa04g00608 Csa-Chr4:4008731 Csa05g00103 Csa-Chr5:521724 4.57E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g39 . . . . . . . . . . . Cma15g01252 . Car15g01129 . . . . . . . . . . Cla07g00757 Cam07g0809 Cec07g0870 Cco07g0847 Clacu07g0790 Cmu07g0797 Cre07g1153 . . Cone6ag0809 . . Csa05g00244 Chy09g01260 Cme07g01617 . . . . . . . . . . Cmo15g01127 Cma06g01085 . . . . Cpe13g00133 Bhi12g00309 . . . Hepe06g1514 . Lcy12g1614 Cla01g00230 Cam01g0236 Cec01g0228 Cco01g0242 Clacu01g0233 Cmu01g0226 Cre09g2284 Lsi09g00219 Csa04g00608 Chy07g01204 Cme09g01797
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000207 7 7 3 10 7 4 5 6 5 3 4 5 6 7 6 6 5 9 5 5 7 5 5 4 6 4 5 12 6 6 175
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00608 Csa_Chr04 FPKM 4.22914 5.24072 18.552383 18.751621 39.448303 36.353001 42.171349 16.327421 15.769798 15.678194