Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00609 ATGGTACTTGTTTCCAGCAATGATAATGGAAATGCAAAGAAAGTTTTGTCCAAATTAGCCAAAGGAAATGGGCATGGTGAAGATTCCTCTTATTTTGATGGGTGGAAAGCTTATGATTCTGATCCTTTTCATCCTATTATCAATCCTCGTGGTGTTATTCAAATGGGTTTAGCTGAAAATCAGCTTTCTTTTGAATTTGTGGAGAAATGGATGAAAAACAATCCAAGAGCTTCAATTTGCAGTGTTGAAGGAATTGATGAGTTCAAGGATATTGCTATCTTTCAAGATTATCATGGATTGCCAGAGTTTAGAAACGCTGTAGCGAACTTCATGGGAAAAGTGAGAGGGAACCGAGTCAAATTTGATCCTGACCGAGTTGTGATGAGTGGTGGAGCAACTGGAGCTCACGAAACCATGGCGTTTTGTTTGGCTGATCCTGGTGAAGCATTTCTTGTTCCTGTTCCTTATTATCCAGGATTCGACAGAGATTTAAGGTGGAGGACAGGAGTGGAAATAGTTCCAGTGATATGTGAAAGTTCAAACAATTTCAAATTAACAAGAGAAGCCTTAGAGACAGCATATGAAGAAGCTCAAAAATCCAACATAAAAATCAAAGGTCTACTCATAACGAATCCTTCAAATCCACTCGGAACGGTTTACGATAGACAAACACTTGAAACTGCTGTATCGTTTATCAACGAAAAGAATATCCACTTAGTGTGCGACGAAATCTACGCTGCCACTGTCTTTGCAGAGCCCGGTTTCATTAGTATCTCTGAAGTGATCGACAACAGTGACATTGAATGCGATAGAAATCTTGTCCATGTCGTTTATAGCCTATCCAAAGACATGGGATTCCCTGGATTTCGTGTCGGTATTATCTACTCTTATAACGACGCTGTTGTTGCATGCGCTCGTAAGATGTCAAGCTTTGGCCTCGTCTCCTCGCAAACTCAATATTTGATTGCATCGATGTTGTTGGATGATGTGTTTGTCGACAACTTTCTTGCTGGGAGTGCTGAAAAACTCGCTGCGCGTCATCGAAACTTCACAAAAGGGCTTGCTCAGGTTGGAATTGGATATTTGAAAGGAAGTGGAGGATTATTTTTATGGATGGATTTGCGTCATCTTTTGAAAGAGAAGACATTGGAAGCAGAAATGGCATTATGGAAAGTGATTATCAATGAAGTTAAACTAAATGTTTCACCAGGTTCTTCATTCCATTGCTCAGAACCAGGATGGTTTAGGGTTTGTTTTGCAAATATGGATGACAATACAATGGACATTTCCATCACCAGGATTAGAAACTTCGTGCTTCAAAACAAGGAGGTAACAACTAAGGTCAAGAAACAAAAATTCTGCTGGCGTCAAAGCAGCCTCGAACTTCGATTGTCATCTCGAAGACTCGAAGACATCATGTCACCACACTCACCGTTGCCTCAATCCCCTATGCTTCGTGCAACAACTTAA 1470 40.48 MVLVSSNDNGNAKKVLSKLAKGNGHGEDSSYFDGWKAYDSDPFHPIINPRGVIQMGLAENQLSFEFVEKWMKNNPRASICSVEGIDEFKDIAIFQDYHGLPEFRNAVANFMGKVRGNRVKFDPDRVVMSGGATGAHETMAFCLADPGEAFLVPVPYYPGFDRDLRWRTGVEIVPVICESSNNFKLTREALETAYEEAQKSNIKIKGLLITNPSNPLGTVYDRQTLETAVSFINEKNIHLVCDEIYAATVFAEPGFISISEVIDNSDIECDRNLVHVVYSLSKDMGFPGFRVGIIYSYNDAVVACARKMSSFGLVSSQTQYLIASMLLDDVFVDNFLAGSAEKLAARHRNFTKGLAQVGIGYLKGSGGLFLWMDLRHLLKEKTLEAEMALWKVIINEVKLNVSPGSSFHCSEPGWFRVCFANMDDNTMDISITRIRNFVLQNKEVTTKVKKQKFCWRQSSLELRLSSRRLEDIMSPHSPLPQSPMLRATT* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4014277 4017001 - CsaV3_4G006090.1 Csa04g00609 526219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00609 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 55 81 - -
Csa04g00609 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 88 104 - -
Csa04g00609 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 125 145 - -
Csa04g00609 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 147 168 - -
Csa04g00609 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 201 225 - -
Csa04g00609 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 237 260 - -
Csa04g00609 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 273 297 - -
Csa04g00609 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 305 328 - -
Csa04g00609 489 Gene3D - 75 328 IPR015421 GO:0003824
Csa04g00609 489 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 11 449 - -
Csa04g00609 489 SUPERFAMILY PLP-dependent transferases 25 438 IPR015424 -
Csa04g00609 489 CDD AAT_like 94 435 - -
Csa04g00609 489 Pfam Aminotransferase class I and II 53 434 IPR004839 GO:0009058|GO:0030170
Csa04g00609 489 Gene3D Aspartate Aminotransferase, domain 1 41 433 IPR015422 GO:0003824
Csa04g00609 489 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 11 449 - -
Csa04g00609 489 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 279 292 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00609 K20772 ACS1_2_6; 1-aminocyclopropane-1-carboxylate synthase 1/2/6 [EC:4.4.1.14] - csv:101212728 979.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01865 Csa-Chr2:17751705 Csa04g00609 Csa-Chr4:4014277 1.54E-166 dispersed
Csa04g00609 Csa-Chr4:4014277 Csa06g00089 Csa-Chr6:577228 0 dispersed
Csa07g02305 Csa-Chr7:21423213 Csa04g00609 Csa-Chr4:4014277 7.77E-17 dispersed
Csa04g00609 Csa-Chr4:4014277 Csa06g03054 Csa-Chr6:26242337 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g40 Blo02g01120 Blo03g00222 Bda06g00119 . . Bpe07g00098 . . . Cmo16g00632 . . . . . Cpe14g00493 . . . . . . . . Cla07g00752 Cam07g0805 Cec07g0867 Cco07g0843 Clacu07g0787 Cmu07g0794 Cre07g1146 . . . Cone9ag0808 . . . Cme07g01616 . . . . . . . Bma12g00069 . . . . Cma16g00582 . . . . . . . . . . . . . . . . . . . Csa04g00609 Chy07g01202 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001626 1 2 3 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 5 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00609 Csa_Chr04 FPKM 6.417892 6.235288 3.324203 2.44667 5.656856 6.170352 6.20957 2.537875 2.803656 3.064609