Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00611 ATGGAGGATTGGGGTTTGCAAGCAATTGTAAAAGGGTGCAATGGAATACCAATTGGTTCTTCAACAACAGCAGCAACAACAAGGCTTATGGAAGATTCAAATTGGTATTCTTTTTTGAGATCAGATCAAGAAGAAGATGAATTTTTTTCTTCTTGTGTTTATAATAGTAGTTATAATAATCCTCAAATTTCAAGTTCTTCAATATTTCATGATGAGTTTGAAGGATTATTTGGAAGAAATTCATCTAATAATTCAGCAGCTGCCTCCATTTCTCATCTTCTTAGAGATTTTAAGGAACCTGCAGATCAAAAGCTTCATCACAAGAACCAAATTATCCAACCAACTAAACAGAAACAAAGCAAGAAAAGTAGACAAAATAGGGTAGTGAAAGAGGTGAAAGCAGATAAAGTATGTTCAGATTCATGGGGATGGAGAAAATACGGACAAAAACCAATCAAAGGCTCTCCATACCCAAGAAGCTATTATAGATGCAGCTCCTCGAAAGGATGTTCTGCTCGAAAGCAAGTCGAGCGTAGCCTCTCCGATCCCGAAGTCTTTATCGTAACCTACACGGCGGAGCACAACCATGCCGAGCCTACTCGCCGCAACGCCCTTGCTGGGACCACCCGGAAGAAGTTTCCGGCACTTGAGAACCCGAATTTAGACATGATTCTCTCACCTAATAATTCAACTTCAGTGGCATCCATTGAAGAAGATCAACATCCAATGGAAGGTGTGACAGATGGGGAAGTTTTGATTGATATGCCATTTGAATTCTTCACTGGTTTGGAGGATTTACTTTTTGGATGA 810 39.75 MEDWGLQAIVKGCNGIPIGSSTTAATTRLMEDSNWYSFLRSDQEEDEFFSSCVYNSSYNNPQISSSSIFHDEFEGLFGRNSSNNSAAASISHLLRDFKEPADQKLHHKNQIIQPTKQKQSKKSRQNRVVKEVKADKVCSDSWGWRKYGQKPIKGSPYPRSYYRCSSSKGCSARKQVERSLSDPEVFIVTYTAEHNHAEPTRRNALAGTTRKKFPALENPNLDMILSPNNSTSVASIEEDQHPMEGVTDGEVLIDMPFEFFTGLEDLLFG* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4040395 4042324 + CsaV3_4G006110.1 Csa04g00611 526221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00611 269 Gene3D WRKY domain 117 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa04g00611 269 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 233 IPR044810 GO:0003700
Csa04g00611 269 MobiDBLite consensus disorder prediction 104 130 - -
Csa04g00611 269 ProSiteProfiles WRKY domain profile. 133 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa04g00611 269 Pfam WRKY DNA -binding domain 140 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa04g00611 269 SUPERFAMILY WRKY DNA-binding domain 136 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa04g00611 269 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 3 233 - -
Csa04g00611 269 SMART WRKY_cls 138 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00611 K13426 WRKY29; WRKY transcription factor 29 - csv:101213208 511.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00611 Csa-Chr4:4040395 Csa06g03875 Csa-Chr6:30645979 1.87E-34 dispersed
Csa03g00861 Csa-Chr3:7225695 Csa04g00611 Csa-Chr4:4040395 6.60E-46 wgd
Csa04g00611 Csa-Chr4:4040395 Csa05g00101 Csa-Chr5:504127 1.72E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g45 . . . . Bpe05g00659 . . . . Cmo16g00630 . . Car02g00702 . . Cpe14g00491 Cpe05g00637 . . . . . . . Cla07g00748 Cam07g0800 Cec07g0865 Cco07g0839 Clacu07g0780 Cmu07g0788 Cre07g1142 . . Cone6ag0812 Cone9ag0811 . . . Cme07g01614 . . Bda07g01906 . . . Bma05g00832 . . Cmo02g01102 Cmo15g01124 . Cma16g00580 . . . . . . . . . . . . . . . . . . . Csa04g00611 Chy07g01200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007717 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31510 PF03106 WRKY 8.10E-26 CL0274 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00611 Csa_Chr04 FPKM 30.705362 31.405495 49.888794 47.164181 20.882738 21.298462 21.616095 28.576645 28.215853 28.25235